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The map label for this gene is 89898578

Identifier: 89898578

GI number: 89898578

Start: 915277

End: 915753

Strand: Direct

Name: 89898578

Synonym: CF0771

Alternate gene names: NA

Gene position: 915277-915753 (Clockwise)

Preceding gene: 89898577

Following gene: 89898579

Centisome position: 78.48

GC content: 36.27

Gene sequence:

>477_bases
TTGAAGAAAGTTCCCATAAAAGTTTGTGTTTCTAACAAACAAAAAGATGTTCCAATTCGAGTGCAATCAGCAAAAAAATT
AGTTCTTTGTTGTTTGCAGTATTGGAAAATTACTACGGATCAAGTTTACATTTATTTCCTAGATGATAAAGCTTTAGCTC
AGATTCATGACGAAGTATTCTCAGATCCTTCATTAACAGATACCATCACGTTACCTATAGACTCTCCAGGGATTTCCTCC
CACCCCCACGTTCTAGGTGAAGCTTTTATTAGTCCCAAAGCTGCTATACGATTTTTAAAAGATCGTTCCCAAGATTCTGA
TCTTCTATATGAAGAAATTTCTCGCTATGTTGTCCATTCCCTCCTGCACATGCTGGGATACGATGACCAAACTCCTGAGG
AAAGAAAAAAAATGAGAGTTAAAGAAAATCAAGCGCTATGTATGTTAAGAGAAAAACATGCGCTTCTATCAGATTAA

Upstream 100 bases:

>100_bases
TTTTGCGTAAGTTAGGCCGTTGGAATGATGCCACAGCAAAAAAAGCTACCGGTCTTCCTAAGACTCCTGTAATGAAATAA
ATTTTTTTTGCTGATTTATC

Downstream 100 bases:

>100_bases
AATGCTTGATTTCCTATTGGCAATTTCTCTCCTTGTTCTCCTATTTTCCACAGCCCTAACACAAAAATCAGTCAAAACAC
AAGAGGATGATACACTCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKVPIKVCVSNKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVFSDPSLTDTITLPIDSPGISS
HPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRVKENQALCMLREKHALLSD

Sequences:

>Translated_158_residues
MKKVPIKVCVSNKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVFSDPSLTDTITLPIDSPGISS
HPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRVKENQALCMLREKHALLSD
>Mature_158_residues
MKKVPIKVCVSNKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVFSDPSLTDTITLPIDSPGISS
HPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRVKENQALCMLREKHALLSD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLFF (Q253J5)

Other databases:

- EMBL:   AP006861
- RefSeq:   YP_515688.1
- ProteinModelPortal:   Q253J5
- SMR:   Q253J5
- STRING:   Q253J5
- GeneID:   3958376
- GenomeReviews:   AP006861_GR
- KEGG:   cfe:CF0771
- eggNOG:   COG0319
- HOGENOM:   HBG402669
- OMA:   YEEISRY
- ProtClustDB:   CLSK2391191
- BioCyc:   CFEL264202:CF0771-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18172; Mature: 18172

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVPIKVCVSNKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVF
CCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
SDPSLTDTITLPIDSPGISSHPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHS
CCCCCCCEEEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLHMLGYDDQTPEERKKMRVKENQALCMLREKHALLSD
HHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKVPIKVCVSNKQKDVPIRVQSAKKLVLCCLQYWKITTDQVYIYFLDDKALAQIHDEVF
CCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
SDPSLTDTITLPIDSPGISSHPHVLGEAFISPKAAIRFLKDRSQDSDLLYEEISRYVVHS
CCCCCCCEEEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLHMLGYDDQTPEERKKMRVKENQALCMLREKHALLSD
HHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA