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The map label for this gene is rnhB2 [H]

Identifier: 89898516

GI number: 89898516

Start: 819694

End: 820596

Strand: Direct

Name: rnhB2 [H]

Synonym: CF0709

Alternate gene names: 89898516

Gene position: 819694-820596 (Clockwise)

Preceding gene: 89898514

Following gene: 89898517

Centisome position: 70.29

GC content: 38.87

Gene sequence:

>903_bases
ATGTCTACACCATTTGTGACCACGCTCTCATCCTCTTTATACGGCTTGCTTAAGGATCGCCTTGAGGAAAAAGGCTTTAT
TTTAACACAACCGCAATACACTATTTTCCAAGCACGCTCTCCCTCGGTAATGTGTACTCTCTATTCCTCTGGAAAGCTTG
TTGTTCAAGGGAAGGGATCTAAAGAATTTATCGAATTTTTCTTAGAGCCTGAAATTCTGCTAACATTTACTCATAACCGT
GTAGAAGCAGATCTTCGTCCTCGCTTAGGTGTTGATGAATCTGGAAAGGGAGATTTTTTTGGCCCTCTATGTATTGCTGG
GGTCTATGCTCGCGATGAAGAGACTCTGAAAAGTCTCTATAAAACAAAAATCCAAGATTCAAAACTACTCAATGATGCGC
AAATCCTCTCCTTAGCAAAAACTATTCGTTCCTCCTGTACCTACGATGTTATGATTCTTTATCCAGAAAAATATAATGAG
CTTTATGGGAAATTTCATAATCTCAATATTCTTCTAGCCTGGGCACACGCAACAATCATTGATAAACTTGCTCCACGTCC
TTCTGGAGAAGTTTTTGCTATTTCCGATCAATTTGCTTCCTCAGAAAGTGTTTTACTCAATGCATTAAAAAAGAAAAATA
CCGATATTTCGGTAATTCAAAAAGTACGCGCAGAACAAGATATCGTTGTCGCTGCAGCGTCTATATTGGCTAGAGAGGCC
TTTATTACAACAATGACAAATTTAGAACAGCGCTTCTCCTTAAAGCTACCTAAAGGAGCCTCTGCGCAGGTAAAATCTGT
AGGAAAATCTATTTTAAACAGCCGGGGAAAAGAGGTTTTATCTCTTGTGTGCAAAACACATTTTAAAACCTTCAATGAAA
TTTGTGACTCTGCCTCTGCTTAA

Upstream 100 bases:

>100_bases
CACTATATATCCTTATGCTATGTAGGGTATGATGATATATGTGCACAGAAAACAGAAATTTTCTATCCTTAGTACGCCAA
GATAATTCGTCGTTTTTTTT

Downstream 100 bases:

>100_bases
AAATAGCGTAAACAACCTCTGGGAATTCTTGAAATAAAAACCGGAGTTATTGCTAATTCCCATGAAAATAAGTAGTAATC
TATCCTATGAAAGTATAGTC

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSTPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSSGKLVVQGKGSKEFIEFFLEPEILLTFTHNR
VEADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKTIRSSCTYDVMILYPEKYNE
LYGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFASSESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREA
FITTMTNLEQRFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA

Sequences:

>Translated_300_residues
MSTPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSSGKLVVQGKGSKEFIEFFLEPEILLTFTHNR
VEADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKTIRSSCTYDVMILYPEKYNE
LYGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFASSESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREA
FITTMTNLEQRFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA
>Mature_299_residues
STPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSSGKLVVQGKGSKEFIEFFLEPEILLTFTHNRV
EADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKTIRSSCTYDVMILYPEKYNEL
YGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFASSESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREAF
ITTMTNLEQRFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 33312; Mature: 33181

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSSGKLVVQGKGS
CCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEEEEEECCCEEEEEECCC
KEFIEFFLEPEILLTFTHNRVEADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLY
HHHHHHHCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
KTKIQDSKLLNDAQILSLAKTIRSSCTYDVMILYPEKYNELYGKFHNLNILLAWAHATII
HHHCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCCCCCEEEEEEHHHHHH
DKLAPRPSGEVFAISDQFASSESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREA
HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
FITTMTNLEQRFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA
HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSSGKLVVQGKGS
CCCHHHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEEEEEECCCEEEEEECCC
KEFIEFFLEPEILLTFTHNRVEADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLY
HHHHHHHCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
KTKIQDSKLLNDAQILSLAKTIRSSCTYDVMILYPEKYNELYGKFHNLNILLAWAHATII
HHHCCHHHHCCHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHCCCCCCEEEEEEHHHHHH
DKLAPRPSGEVFAISDQFASSESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREA
HHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
FITTMTNLEQRFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA
HHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12682364 [H]