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The map label for this gene is abc1 [C]

Identifier: 89898182

GI number: 89898182

Start: 438994

End: 439779

Strand: Direct

Name: abc1 [C]

Synonym: CF0375

Alternate gene names: 89898182

Gene position: 438994-439779 (Clockwise)

Preceding gene: 89898181

Following gene: 89898183

Centisome position: 37.64

GC content: 40.46

Gene sequence:

>786_bases
ATGGAGGCAAAAAAGCGTTCTCGTATTTTCCGCATACTTTATACATTTCCTTTGGAATTAGGTAGGTGGATGGGATTTAC
CTATGCGGTAATCAAAAGCTTTTCATGGAAAAAGAGCTTATTACGATCGACAAGCATGCAGGGTTACGATATCGGAGTGG
CTTCTTTGCCAGTAGTTATGCTTACTGGAGCAGTTACAGGTATTGTTTTAGCCTTGCAGTCCTATTATCAATTAGGAATT
CATGGCTTATCCTGCGCTATAGGATTTTTTGTTGTAAAAAGTATTTTGGTGGAGATTGGTCCAGTTCTTACTGCACTTGC
TCTTTCGGGAAGAGTAGGGGGAGCAATCTCCGCCTTTTTAGGCACCATGCGCATGACAGAACAAGTGAGCGCTATGGAAA
CTTTAGGAGTGAATCCTTTAGAATATTTTGCTCTTCCTAGAATCATTGCGGGTATTATTGCCATGCCAGCTTTAGTCATT
GCTGCGGTATGGGCTGGGATCTTTTGTGGGTATTTGCTGTGTCGTTGCGCATTTCAATTACCCGCGCATGTGTATTTACA
CATGGTATCGGGAAATGTATTGATATCCGATATTGTAATGGTCATTGTTAAGTCTTTAGTATTTGGATTCATTATCACAT
CTTTGGCTTGTTATCAGGGGTTAGGAAAGCATTGCCGTATTATGGATGTGGCAAAGGTAACCACAGCAGGAGTTGTAACT
TCGTACATTTCCATTTTATTTGCAAATTGTGTGATTACAACATTTTTTCATCTTCTAGGCTACTAG

Upstream 100 bases:

>100_bases
AAATCTAGCCTATACGCAAAATGTGCTTATTGATAGTTTGGTGAAATCTTTCGACAACGTTTAAGGTAAGGGATTTTCTC
AAGGTTTTGAGGATACTGAC

Downstream 100 bases:

>100_bases
GGGGAGGGATATGGTAGAGCCCTGGATTTCTGTAGATCGGATTTATAAGAGTTATTACGATAACGAAGGTCAGGGTCATA
CGGTATTACATGGGATTTCT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MEAKKRSRIFRILYTFPLELGRWMGFTYAVIKSFSWKKSLLRSTSMQGYDIGVASLPVVMLTGAVTGIVLALQSYYQLGI
HGLSCAIGFFVVKSILVEIGPVLTALALSGRVGGAISAFLGTMRMTEQVSAMETLGVNPLEYFALPRIIAGIIAMPALVI
AAVWAGIFCGYLLCRCAFQLPAHVYLHMVSGNVLISDIVMVIVKSLVFGFIITSLACYQGLGKHCRIMDVAKVTTAGVVT
SYISILFANCVITTFFHLLGY

Sequences:

>Translated_261_residues
MEAKKRSRIFRILYTFPLELGRWMGFTYAVIKSFSWKKSLLRSTSMQGYDIGVASLPVVMLTGAVTGIVLALQSYYQLGI
HGLSCAIGFFVVKSILVEIGPVLTALALSGRVGGAISAFLGTMRMTEQVSAMETLGVNPLEYFALPRIIAGIIAMPALVI
AAVWAGIFCGYLLCRCAFQLPAHVYLHMVSGNVLISDIVMVIVKSLVFGFIITSLACYQGLGKHCRIMDVAKVTTAGVVT
SYISILFANCVITTFFHLLGY
>Mature_261_residues
MEAKKRSRIFRILYTFPLELGRWMGFTYAVIKSFSWKKSLLRSTSMQGYDIGVASLPVVMLTGAVTGIVLALQSYYQLGI
HGLSCAIGFFVVKSILVEIGPVLTALALSGRVGGAISAFLGTMRMTEQVSAMETLGVNPLEYFALPRIIAGIIAMPALVI
AAVWAGIFCGYLLCRCAFQLPAHVYLHMVSGNVLISDIVMVIVKSLVFGFIITSLACYQGLGKHCRIMDVAKVTTAGVVT
SYISILFANCVITTFFHLLGY

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=208, Percent_Identity=33.1730769230769, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 28317; Mature: 28317

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA