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The map label for this gene is psdD

Identifier: 89897894

GI number: 89897894

Start: 96430

End: 97329

Strand: Direct

Name: psdD

Synonym: CF0087

Alternate gene names: 89897894

Gene position: 96430-97329 (Clockwise)

Preceding gene: 89897889

Following gene: 89897895

Centisome position: 8.27

GC content: 41.89

Gene sequence:

>900_bases
GTGAAGAAACTGCAATACATTGACCGCTTAACTAATCAAAGGGTGACGGAAGCCGTCTGTTACGAAAAAACTATGACGTT
GCTATATACCTCGAGGTTAGGAAAATGGCTGTCCACTCTATTAGCTAAGACTCCAATTCTGTCGCGTATCTATGGTTGGA
TTCAAAAACGTTCTTGGACACGTAGAAAAATTCCTGGGTTTGTAAAGAGAAATCATATTTGCGTGCAAGAATTCAAAAAA
TCTCTTTCCGAGTTTTCCTCTTTCAATGATTTTTTTACCAGAGAGCTGCGTCCCGAGGCCCGGCCTATTGCTCAGGGTGA
TAATATTTGTGTTGCTCCTGTTGATGGTGCGTATCTTATTTACCCAAATATTGCCGAGTTCGGAGAGTTTGTTGTTAAAT
CTAAACATTTCTCTCTTTCAAAACTTTTAGGCGATGCCTCGCTCGTTGAAAAGTATGCTTCCGGTAGCGTGGTTTTTGCC
CGCCTAGCTCTTTTTGACTATCATCGTTTTCATTTCCCTGTGGATTGCTGGGCAGGACCAACTCGTAACGTCAACGGGTA
TTTATTTTCTGTGCATCCGATGGCCTTGAAAGATAATTTTAATATTTTTTGTGAAAATAAACGTACCCTAACCGAACTTA
AAACCGAGGCATTCGGAGATGTGTTGTACTTGGAGGTCGGGGCATTAAATGTTGGCTCTATTATTCAAACCTACGCACCA
GAAAAAAGATATTCTAAGGGGGATGAAAAAGGTTTTTTTGAAATTGGGGGGTCCACGGTTATCATACTATTTCAACCGGG
GACGATCAAGTTTGACGCGGACCTGCTAAGGAATTCGCGAATGGGATTAGAAACACGTTGCCTTATGGGGCAATCTTTAG
GGCGCTCTTTGGGAGAATAA

Upstream 100 bases:

>100_bases
GATGTATGTAGGTTTTTTAACGATTTCTATTTAATTAGTTTGGAATATTATTTAATAACTTTTTATAGTCGCCGGTTTAG
ATCTTACAGATCGAGGACAA

Downstream 100 bases:

>100_bases
AATTAAAGACTTTAAAGGTTTTTTTTTGTATTGCAAGGAGAGAGAAAAGTGAATTTTGGCGAATTATGTGGCTAGTCATC
CCATGGGCTTTAGTTGCAGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKLQYIDRLTNQRVTEAVCYEKTMTLLYTSRLGKWLSTLLAKTPILSRIYGWIQKRSWTRRKIPGFVKRNHICVQEFKK
SLSEFSSFNDFFTRELRPEARPIAQGDNICVAPVDGAYLIYPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFA
RLALFDYHRFHFPVDCWAGPTRNVNGYLFSVHPMALKDNFNIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAP
EKRYSKGDEKGFFEIGGSTVIILFQPGTIKFDADLLRNSRMGLETRCLMGQSLGRSLGE

Sequences:

>Translated_299_residues
MKKLQYIDRLTNQRVTEAVCYEKTMTLLYTSRLGKWLSTLLAKTPILSRIYGWIQKRSWTRRKIPGFVKRNHICVQEFKK
SLSEFSSFNDFFTRELRPEARPIAQGDNICVAPVDGAYLIYPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFA
RLALFDYHRFHFPVDCWAGPTRNVNGYLFSVHPMALKDNFNIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAP
EKRYSKGDEKGFFEIGGSTVIILFQPGTIKFDADLLRNSRMGLETRCLMGQSLGRSLGE
>Mature_299_residues
MKKLQYIDRLTNQRVTEAVCYEKTMTLLYTSRLGKWLSTLLAKTPILSRIYGWIQKRSWTRRKIPGFVKRNHICVQEFKK
SLSEFSSFNDFFTRELRPEARPIAQGDNICVAPVDGAYLIYPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFA
RLALFDYHRFHFPVDCWAGPTRNVNGYLFSVHPMALKDNFNIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAP
EKRYSKGDEKGFFEIGGSTVIILFQPGTIKFDADLLRNSRMGLETRCLMGQSLGRSLGE

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily

Homologues:

Organism=Escherichia coli, GI1790604, Length=252, Percent_Identity=34.1269841269841, Blast_Score=104, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71980843, Length=251, Percent_Identity=28.6852589641434, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71980840, Length=251, Percent_Identity=28.6852589641434, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6321609, Length=238, Percent_Identity=34.0336134453782, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CHLFF (Q256C9)

Other databases:

- EMBL:   AP006861
- RefSeq:   YP_515004.1
- STRING:   Q256C9
- GeneID:   3959290
- GenomeReviews:   AP006861_GR
- KEGG:   cfe:CF0087
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   NKREWSI
- ProtClustDB:   PRK00723
- BioCyc:   CFEL264202:CF0087-MONOMER
- HAMAP:   MF_00663
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 34096; Mature: 34096

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLQYIDRLTNQRVTEAVCYEKTMTLLYTSRLGKWLSTLLAKTPILSRIYGWIQKRSWT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
RRKIPGFVKRNHICVQEFKKSLSEFSSFNDFFTRELRPEARPIAQGDNICVAPVDGAYLI
HHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE
YPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFARLALFDYHRFHFPVDCWAGP
CCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TRNVNGYLFSVHPMALKDNFNIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAP
CCCCCEEEEEECCEEEECCCCEEECCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCC
EKRYSKGDEKGFFEIGGSTVIILFQPGTIKFDADLLRNSRMGLETRCLMGQSLGRSLGE
CHHCCCCCCCCEEEECCCEEEEEECCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKLQYIDRLTNQRVTEAVCYEKTMTLLYTSRLGKWLSTLLAKTPILSRIYGWIQKRSWT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
RRKIPGFVKRNHICVQEFKKSLSEFSSFNDFFTRELRPEARPIAQGDNICVAPVDGAYLI
HHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEE
YPNIAEFGEFVVKSKHFSLSKLLGDASLVEKYASGSVVFARLALFDYHRFHFPVDCWAGP
CCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
TRNVNGYLFSVHPMALKDNFNIFCENKRTLTELKTEAFGDVLYLEVGALNVGSIIQTYAP
CCCCCEEEEEECCEEEECCCCEEECCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCC
EKRYSKGDEKGFFEIGGSTVIILFQPGTIKFDADLLRNSRMGLETRCLMGQSLGRSLGE
CHHCCCCCCCCEEEECCCEEEEEECCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA