Click here to switch to the map view.

The map label for this gene is recD1 [H]

Identifier: 89897814

GI number: 89897814

Start: 6616

End: 8103

Strand: Direct

Name: recD1 [H]

Synonym: CF0007

Alternate gene names: 89897814

Gene position: 6616-8103 (Clockwise)

Preceding gene: 89897813

Following gene: 89897818

Centisome position: 0.57

GC content: 37.84

Gene sequence:

>1488_bases
ATGTTTTCTCACCTTCTTGAAGATGTTGTCCGACAACAAATTGTTCTGCCTCTAGACCTAGCTTTCGCCAGGAAGCATAT
CTCTTCCGAATCAAAAAAAGCCTTTGCGTTTTTGGCTCTTTCTTCTGCTCTTTGGCGCTGCGGGTATCCCTTTCTTACTA
TAGAAAAAGATCGCTTGTTTCCCTCGGTATCAGGCATTTCTGAAAATCTTTTTTACGAGTGTTTTCAGGATCTTCCCGAG
GATGTTTTCTCGTCTTTATTTGTTATAGAGAACAATAAAATTTTCTTACGATCTTTGTATTTAGTTCGTGAAAAGCTTTT
TAAAAAGCTATCATTATTGTCCCAAGCTTCTTCTCGATACAATATCCCCGCAACAAATCTCCCGAATCTATCTTCTGAGC
AAAATGTCGTTTTTCAAAAGGCTTTGAATAGCTGTTTTTCTTTAATCTGTGGCGGTCCTGGAACAGGAAAGACTTTTTTA
GCGACACAGATGATTCTCGCGCTAATTAAGCAAAATCCTAAAATTCGTATTGCTATAGTTTCTCCAACAGGAAAAGCAAC
ATCTCATATTCGTCACATACTTTCTAAATACAATGTGTCAGAGGAGAACGTCACGATCCAAACTATACATAGGTTTTTGC
AAGAGTATGTCTATCGTCAATGCAGTTCAGTAGATCTATTACTAGTTGATGAAGGCTCGATGGTGACGTTTAATTTGTTG
CATAGTTTGGTAAATACGCTGTCAGGAGAGAATAGGAATGGGAAAATTATCGCTGATAATTTAATTATTTTAGGAGACGA
AAATCAGCTGCCTCCTATAGGTGTTGGTGCTGGAAACCCTCTTCAAGATTTAATATTGCGTTTTCCTGAAAGAGCTTTGC
ATCTTAGGGTATCTCACCGAGCTAAAACCGATTGTGTGCAAAAATTTTCCAAGGCTATATTGGAAAAACAAACAATTCCC
TTTACACCGTTACCCCCTTTGTATTCAGCAGTATCTATGATTAAAGAGGAATTTATAAAAACTCCTTCATCTCAAACACG
ATTATGTGTTTTAACCCCTATGCGTCACGGTCTTTGGGGGTATCTACATCTCAACAATCTTATTTTTAATGAAATACAAA
AAACTCATTCTGATCTACCAATTCCTATCATGATCACAGAACGTTATGAAGCTTGGGATCTATTTAATGGGGATACGGGA
TTCTTCAGCCCAAAAACACAAAGGCTGTATTTTCCTCACAATCGTTCTATAGATGCTAAGGAGTTTTCCTATTATACCTA
CAACTATGCCATGTCGGTGCATAAGAGTCAGGGGAGTGAATATGATGATGTAATTGTTATCATCCCTAAAGGATGTGAAA
TTTTCGACGTATCGATTCTCTACACAGCGATTACGCGCGCCAAACATAACGTGTCTGTATGGGCAGATGGAGAGACTTTG
AATAGGATCATAAAAAAACCCCACAAGTATACTTATGGGGTAAAATAA

Upstream 100 bases:

>100_bases
AAGGCTCTAGTTTTGTGCCAAAAACATCTACCCAAAGATCTCATGGCAGGTTATAAAAGAGAGTAAAATGCATAGAATAG
CTATGTCTTATTAAACCTTG

Downstream 100 bases:

>100_bases
ACAGCTTCTTTTTGCAAGATTTCTTAGCCGATGAAACCTTGAACAAAATTGAGTACTGAAGATATCAACCAGAAAATACC
GATGACAAGCAAGGCGTGAG

Product: ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYPFLTIEKDRLFPSVSGISENLFYECFQDLPE
DVFSSLFVIENNKIFLRSLYLVREKLFKKLSLLSQASSRYNIPATNLPNLSSEQNVVFQKALNSCFSLICGGPGTGKTFL
ATQMILALIKQNPKIRIAIVSPTGKATSHIRHILSKYNVSEENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLL
HSLVNTLSGENRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHRAKTDCVQKFSKAILEKQTIP
FTPLPPLYSAVSMIKEEFIKTPSSQTRLCVLTPMRHGLWGYLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTG
FFSPKTQRLYFPHNRSIDAKEFSYYTYNYAMSVHKSQGSEYDDVIVIIPKGCEIFDVSILYTAITRAKHNVSVWADGETL
NRIIKKPHKYTYGVK

Sequences:

>Translated_495_residues
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYPFLTIEKDRLFPSVSGISENLFYECFQDLPE
DVFSSLFVIENNKIFLRSLYLVREKLFKKLSLLSQASSRYNIPATNLPNLSSEQNVVFQKALNSCFSLICGGPGTGKTFL
ATQMILALIKQNPKIRIAIVSPTGKATSHIRHILSKYNVSEENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLL
HSLVNTLSGENRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHRAKTDCVQKFSKAILEKQTIP
FTPLPPLYSAVSMIKEEFIKTPSSQTRLCVLTPMRHGLWGYLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTG
FFSPKTQRLYFPHNRSIDAKEFSYYTYNYAMSVHKSQGSEYDDVIVIIPKGCEIFDVSILYTAITRAKHNVSVWADGETL
NRIIKKPHKYTYGVK
>Mature_495_residues
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYPFLTIEKDRLFPSVSGISENLFYECFQDLPE
DVFSSLFVIENNKIFLRSLYLVREKLFKKLSLLSQASSRYNIPATNLPNLSSEQNVVFQKALNSCFSLICGGPGTGKTFL
ATQMILALIKQNPKIRIAIVSPTGKATSHIRHILSKYNVSEENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLL
HSLVNTLSGENRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHRAKTDCVQKFSKAILEKQTIP
FTPLPPLYSAVSMIKEEFIKTPSSQTRLCVLTPMRHGLWGYLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTG
FFSPKTQRLYFPHNRSIDAKEFSYYTYNYAMSVHKSQGSEYDDVIVIIPKGCEIFDVSILYTAITRAKHNVSVWADGETL
NRIIKKPHKYTYGVK

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=161, Percent_Identity=31.055900621118, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 56294; Mature: 56294

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYPFLTIEKDRLF
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHCC
PSVSGISENLFYECFQDLPEDVFSSLFVIENNKIFLRSLYLVREKLFKKLSLLSQASSRY
CCHHCCHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NIPATNLPNLSSEQNVVFQKALNSCFSLICGGPGTGKTFLATQMILALIKQNPKIRIAIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
SPTGKATSHIRHILSKYNVSEENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLL
CCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHH
HSLVNTLSGENRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHR
HHHHHHHCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHEEEEEHHH
AKTDCVQKFSKAILEKQTIPFTPLPPLYSAVSMIKEEFIKTPSSQTRLCVLTPMRHGLWG
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE
YLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTGFFSPKTQRLYFPHNRSIDAK
EEEHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCEEECCCCCCCCHH
EFSYYTYNYAMSVHKSQGSEYDDVIVIIPKGCEIFDVSILYTAITRAKHNVSVWADGETL
HEEEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHCCCCEEEEECCHHH
NRIIKKPHKYTYGVK
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYPFLTIEKDRLF
CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHCC
PSVSGISENLFYECFQDLPEDVFSSLFVIENNKIFLRSLYLVREKLFKKLSLLSQASSRY
CCHHCCHHHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NIPATNLPNLSSEQNVVFQKALNSCFSLICGGPGTGKTFLATQMILALIKQNPKIRIAIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
SPTGKATSHIRHILSKYNVSEENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLL
CCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHH
HSLVNTLSGENRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHR
HHHHHHHCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHEEEEEHHH
AKTDCVQKFSKAILEKQTIPFTPLPPLYSAVSMIKEEFIKTPSSQTRLCVLTPMRHGLWG
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEE
YLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTGFFSPKTQRLYFPHNRSIDAK
EEEHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCCCCCEEECCCCCCCCHH
EFSYYTYNYAMSVHKSQGSEYDDVIVIIPKGCEIFDVSILYTAITRAKHNVSVWADGETL
HEEEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHCCCCEEEEECCHHH
NRIIKKPHKYTYGVK
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]