Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 89257202

GI number: 89257202

Start: 1894287

End: 1895783

Strand: Reverse

Name: rng [H]

Synonym: FTL_1968

Alternate gene names: 89257202

Gene position: 1895783-1894287 (Counterclockwise)

Preceding gene: NA

Following gene: 89257201

Centisome position: 99.99

GC content: 27.79

Gene sequence:

>1497_bases
ATGTCATTTAATACAGAAATCTTTTTGAATATAAACAAGTATGAACAAAGAATAGCCATAAAAGAAAACAATATCCTCAA
AGAAATTTTGATAGAACGTGATAATCAAAAAAGAATAGTTGGAAACATTTATAAAGGAAAAATAATCAGAGTTCTTCCTG
GAATGCAAGCAGCTTTTGTAGATATTGGTTTAGAAAAGGCAGGATTTTTACATTTATCAGAAGTCATACCTCTAGAGAAG
GAAGATGATGATTCTGATGAAAATTTTAAGCTCAAAAAATTAAATACCAAAGATATCAATAAATGGCTACGTGAAGGTCA
AGAAGTTCTAGTTCAAGTAGTCAAAGAGAGCATAGGTAATAAAGGAGTAAAATTAACATCACATTTATCAGTATCTTCAC
GTTTTTTGGTTTTTTTACCTGATTTAGATCATATAGGTGTTTCACTTAAGATAACAAATGAACAAGAAAAGCAACGTCTA
TTAGAATCCATAAAAAAAATTACCCAAAGTGAAAATCCACGTGGATATATTCTAAGAACAGCTGCTGAAGGCGCTAGTTA
TGAAGAATTAGAGAATGATATAAAATTTTTGAATAACTTATGGCAAGATATTTTAGATATTTCTAGTACAATCATCAAAC
CTGGTGTTGTTTATGAAGATTTTAGTTTAATAATCAAGACTATCAATATATTTGCTAATGATAATCTCGATAAAATACTT
GTAGATAATATCGATTCATATAAAGAAATATGCCACTTTGCAGATAAATATATTCCTGGTTTAAGAGAGAAAATAGAACT
TTATCAAAAGCATAATATCTTTGAAGAGTATGATATTGAAAATGAGATAAATAAAGCTTTAGATAAAATGGTTTATCTAA
AATCTGGTGGTTACTTAGTTATCGAACAAACTGAAGCAATGATAACTATAGATATCAACACAGGTGGTTTTATTGGTACA
AAAAACCTAGAAGAAACTATATTTAAGACAAATCTAGAAGCTACTAAAGAAATAGCAAGACAATTAAGACTAAGAAATTT
AGGTGGTATTATAATTATAGATTTTATTGATATGATGGATCAATCTCATAGAATACAAGTTTTAGAGGCTCTAAAGAAAG
AATTAGAACTAGATAAGGCTAAGACTAGCGTAAGTGATATTTCTGAGCTAGGATTGGTTGAAATGACGCGTAAAAGGGTC
CATGAGAGTCTACTTAGAACTTTATGTCAGCCATGTGAACATTGTAGTGGCAAAGGAAGTGTCAAAACATTACAGACAAT
TTGTTATGATATTTTTAGAGAAATAAAATCTGAATCAAAAAATTATCCAAGTTATAATGATTTCTTATTAATTTCTTCTG
AAAAAATAATTGATTATATAGAAAAAGAAGAATCTATTTGGCTTGCAGAATTAGAATTAGAAATACAAAAAAATATTCAT
CTAAAAGTAGAAAATAGCCATATATATAACCAATACGATATAATTCCGTTAAATTAA

Upstream 100 bases:

>100_bases
TTATATATTAATAAGTAAAGTAAAAGAAAATAAATTCAAAAATATAAAAAAAATTTTTTCTCTATAATAAATGTTAATAA
AATAAAAATATTATTTTCTA

Downstream 100 bases:

>100_bases
AAAAATTTCTAAAACATTGTTGACAGCTTTAGAAAAAGAGCTATAATACATACTCATAGTCGCCGACTTAGCTCAATAGG
TAGAGCAACTGACTTGTAAT

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MSFNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSEVIPLEK
EDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSSRFLVFLPDLDHIGVSLKITNEQEKQRL
LESIKKITQSENPRGYILRTAAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKIL
VDNIDSYKEICHFADKYIPGLREKIELYQKHNIFEEYDIENEINKALDKMVYLKSGGYLVIEQTEAMITIDINTGGFIGT
KNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALKKELELDKAKTSVSDISELGLVEMTRKRV
HESLLRTLCQPCEHCSGKGSVKTLQTICYDIFREIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIH
LKVENSHIYNQYDIIPLN

Sequences:

>Translated_498_residues
MSFNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSEVIPLEK
EDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSSRFLVFLPDLDHIGVSLKITNEQEKQRL
LESIKKITQSENPRGYILRTAAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKIL
VDNIDSYKEICHFADKYIPGLREKIELYQKHNIFEEYDIENEINKALDKMVYLKSGGYLVIEQTEAMITIDINTGGFIGT
KNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALKKELELDKAKTSVSDISELGLVEMTRKRV
HESLLRTLCQPCEHCSGKGSVKTLQTICYDIFREIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIH
LKVENSHIYNQYDIIPLN
>Mature_497_residues
SFNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLEKAGFLHLSEVIPLEKE
DDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGNKGVKLTSHLSVSSRFLVFLPDLDHIGVSLKITNEQEKQRLL
ESIKKITQSENPRGYILRTAAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKILV
DNIDSYKEICHFADKYIPGLREKIELYQKHNIFEEYDIENEINKALDKMVYLKSGGYLVIEQTEAMITIDINTGGFIGTK
NLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDQSHRIQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVH
ESLLRTLCQPCEHCSGKGSVKTLQTICYDIFREIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIHL
KVENSHIYNQYDIIPLN

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=494, Percent_Identity=45.1417004048583, Blast_Score=423, Evalue=1e-119,
Organism=Escherichia coli, GI1787325, Length=446, Percent_Identity=35.8744394618834, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 57524; Mature: 57393

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFV
CCCCCEEEEEECHHHHEEEECCCHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCHHHHH
DIGLEKAGFLHLSEVIPLEKEDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGN
HCCCCCCCCEEHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
KGVKLTSHLSVSSRFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRT
CCCEEEEEECCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEE
AAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKIL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
VDNIDSYKEICHFADKYIPGLREKIELYQKHNIFEEYDIENEINKALDKMVYLKSGGYLV
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHEEEEECCCEEE
IEQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMD
EEECCEEEEEEECCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC
QSHRIQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKTLQTICYDIFREIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIH
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHCCCCEEEEEEEEEEECCEE
LKVENSHIYNQYDIIPLN
EEEECCEEECEEEEEECC
>Mature Secondary Structure 
SFNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFV
CCCCEEEEEECHHHHEEEECCCHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCHHHHH
DIGLEKAGFLHLSEVIPLEKEDDDSDENFKLKKLNTKDINKWLREGQEVLVQVVKESIGN
HCCCCCCCCEEHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
KGVKLTSHLSVSSRFLVFLPDLDHIGVSLKITNEQEKQRLLESIKKITQSENPRGYILRT
CCCEEEEEECCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEE
AAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNLDKIL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
VDNIDSYKEICHFADKYIPGLREKIELYQKHNIFEEYDIENEINKALDKMVYLKSGGYLV
HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHEEEEECCCEEE
IEQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMD
EEECCEEEEEEECCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC
QSHRIQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCSGKGS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKTLQTICYDIFREIKSESKNYPSYNDFLLISSEKIIDYIEKEESIWLAELELEIQKNIH
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHCCCCEEEEEEEEEEECCEE
LKVENSHIYNQYDIIPLN
EEEECCEEECEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]