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The map label for this gene is xerD [H]

Identifier: 89257003

GI number: 89257003

Start: 1665370

End: 1666248

Strand: Reverse

Name: xerD [H]

Synonym: FTL_1734

Alternate gene names: 89257003

Gene position: 1666248-1665370 (Counterclockwise)

Preceding gene: 89257004

Following gene: 89257002

Centisome position: 87.88

GC content: 34.7

Gene sequence:

>879_bases
GTGTCCTCAGCTGTTGATGCTTTTCTTGATAATCTCTGGCTTGAGCATGGATTAAGCCAAAATACTATTTCATCTTATCG
TACTGATCTTAAATTCTTACAAAATTATTTTGCAAAAACTGATTTAATTAGTTTAGATTTTGAGCAGTTATATGCATTTA
TTTCATATCGTTCAAAAAATGGTTATAGCAGTCATTCTAATGCTCGAATGATATCGACATTGCGTAAATTCTATGCTTGG
CTTATCTCAACTGGTCAAACTAATAATAATCCTACAGCTAAGCTAACATTACCAAAATTAGCCAAGAAGTTACCTAAAGA
TATGACAGAAACTGATGTTGAGAGATTGCTTCAAGCTCCTGATATGACAGAGGATGTTGGTATTCGCGATAAAGCAATGC
TTGAACTGATGTATGCTACAGGTTTACGTGTAAGTGAATTGGTCGGGCTTAATATTGATGATATCAATATCAATATTGGG
GTAATTCAGGTAATGGGTAAGGGTTCAAAAGAGCGTATAGTGCCAATAGGTGAGTATGCATTGGAGTATTTGCAAAAATA
TTTTGCAGAAGCTCGCACGAGTTTATCTAAAAATTTCAAAGAGAAAGCAGTTTTTATCAGTAAGCATGCAAAAAGAATAA
CGCGTCAGTCTTTTTGGCACAGAATCAAAAACTATGCACTTATCGCTGGTATAAATACCGATATTTCGCCTCATACCCTA
AGACATGCATTTGCTACTCACTTACTAAATCATGGGGCTGATTTGAGATCGGTACAGCTATTGCTTGGACATAGTAATGT
TTCAACAACAACTATTTATACACATATATCTCAAAATCGCTTACAAGAGATTTATCAAAAACATCATCCAAGGGGATAA

Upstream 100 bases:

>100_bases
TTTACAATTTGTAAACTCCGCTTTTTCGGATATTTTTGCCTTGTTATATTCCATATAATTTCAGCTTGCAATCGTCTCAA
AACTCTAGGAAAATCAAAAA

Downstream 100 bases:

>100_bases
AACCTCTAATATTAAGTATTTTATTGTTTTATAAACTAGCTATTATTAGTAAATCTAGCTAATGAAACAATACCTTATTG
TTGATATAATAATATTCGGA

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLRKFYAW
LISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIG
VIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL
RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG

Sequences:

>Translated_292_residues
MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLRKFYAW
LISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIG
VIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL
RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG
>Mature_291_residues
SSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLRKFYAWL
ISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGV
IQVMGKGSKERIVPIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLR
HAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=49.1408934707904, Blast_Score=308, Evalue=3e-85,
Organism=Escherichia coli, GI1790244, Length=291, Percent_Identity=38.1443298969072, Blast_Score=205, Evalue=4e-54,
Organism=Escherichia coli, GI1790768, Length=181, Percent_Identity=30.3867403314917, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=30.2197802197802, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33323; Mature: 33191

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCC
GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHCC
DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYA
CCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCEEECHHHH
LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHH
RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG
HHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKN
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCC
GYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAP
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHCC
DMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYA
CCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEEEEECCCCCCCEEECHHHH
LEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHH
RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG
HHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]