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The map label for this gene is deoC [H]

Identifier: 89256936

GI number: 89256936

Start: 1593974

End: 1594708

Strand: Reverse

Name: deoC [H]

Synonym: FTL_1663

Alternate gene names: 89256936

Gene position: 1594708-1593974 (Counterclockwise)

Preceding gene: 89256937

Following gene: 89256935

Centisome position: 84.11

GC content: 33.06

Gene sequence:

>735_bases
ATGATAACTAAGCAAGAGATAGTATCCTTGATAGATTTAACACAACTTGGAGATAGTGATACACAAGTAGATATCGTTAA
TCTTTGTTCTAAAGCGAGAAATTCTCTCGGTGAAGTTGCAGCACTTTGTGTTTATAAGCAATTTATTCCTGTAGTAAAAA
AACAGTTGGGGAATAACTTTAAAGTTGCGACTGTGGTTAATTTCCCTAATGGAGATAATACTATTGAGGATATGATTTCA
GAAGTTAAACAAGCTTTGTCTTTGGGTGCTGATGAGATAGATTTAGTTATAGACTATAAAGAGTATCTTGATCAGGGTTT
TTCTGAGAAATCTTGTCAAATGATGGTTGAGGTTAAAAAACTTTGTAAAGATAAAACTTTTAAGGTGATAATTGAATCTG
GCGAACTTAAAACAGCAAAATTAATTACGAAAGTTTGTCAAGATGTCATAGATGCTGGAGCAGATTTTATCAAAACATCA
ACAGGTAAAACTTCTGAGGGTGCAACGTTAGCAGCTGCACAGGTAATACTTGAAACAATCAAGAGTAGCGCAAAAAGAAT
TGGCTTTAAAGCATCTGGAGGGATAAGAAATTATAATCAAGCAGTTGCATATATCGAATTAGCTGCTAATATACTTGCTA
ATAATTTTATAAATCCGCAAACCTTTAGGTTTGGTGTAAGTGGTCTTTTAGATAACTTGCTTAACGAACAACAAGAGCAG
ATAGATGATTATTAA

Upstream 100 bases:

>100_bases
ATCGGAGCAAGAGATACTTTTGCAGATATTGGGCAAACTATAGCTGACTTTATGGGTATTGAATCTCTAGAGTATGGTAA
ATCAATCTTTGGGGCTAGCC

Downstream 100 bases:

>100_bases
ATCGCTATATTTTATATTAGGTCTTATAGTCATTTATTTTTTAGCTTATATTTGGAGTAATAATCGTAGAAATATCAGAT
ATAAGAATCTTATAATTATT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MITKQEIVSLIDLTQLGDSDTQVDIVNLCSKARNSLGEVAALCVYKQFIPVVKKQLGNNFKVATVVNFPNGDNTIEDMIS
EVKQALSLGADEIDLVIDYKEYLDQGFSEKSCQMMVEVKKLCKDKTFKVIIESGELKTAKLITKVCQDVIDAGADFIKTS
TGKTSEGATLAAAQVILETIKSSAKRIGFKASGGIRNYNQAVAYIELAANILANNFINPQTFRFGVSGLLDNLLNEQQEQ
IDDY

Sequences:

>Translated_244_residues
MITKQEIVSLIDLTQLGDSDTQVDIVNLCSKARNSLGEVAALCVYKQFIPVVKKQLGNNFKVATVVNFPNGDNTIEDMIS
EVKQALSLGADEIDLVIDYKEYLDQGFSEKSCQMMVEVKKLCKDKTFKVIIESGELKTAKLITKVCQDVIDAGADFIKTS
TGKTSEGATLAAAQVILETIKSSAKRIGFKASGGIRNYNQAVAYIELAANILANNFINPQTFRFGVSGLLDNLLNEQQEQ
IDDY
>Mature_244_residues
MITKQEIVSLIDLTQLGDSDTQVDIVNLCSKARNSLGEVAALCVYKQFIPVVKKQLGNNFKVATVVNFPNGDNTIEDMIS
EVKQALSLGADEIDLVIDYKEYLDQGFSEKSCQMMVEVKKLCKDKTFKVIIESGELKTAKLITKVCQDVIDAGADFIKTS
TGKTSEGATLAAAQVILETIKSSAKRIGFKASGGIRNYNQAVAYIELAANILANNFINPQTFRFGVSGLLDNLLNEQQEQ
IDDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=248, Percent_Identity=33.8709677419355, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI1790841, Length=226, Percent_Identity=37.1681415929204, Blast_Score=156, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17533015, Length=243, Percent_Identity=36.2139917695473, Blast_Score=143, Evalue=1e-34,
Organism=Drosophila melanogaster, GI19922098, Length=251, Percent_Identity=31.4741035856574, Blast_Score=110, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26733; Mature: 26733

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKQEIVSLIDLTQLGDSDTQVDIVNLCSKARNSLGEVAALCVYKQFIPVVKKQLGNNF
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
KVATVVNFPNGDNTIEDMISEVKQALSLGADEIDLVIDYKEYLDQGFSEKSCQMMVEVKK
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHEEEEHHHHHCCCCCHHHHHHHHHHHH
LCKDKTFKVIIESGELKTAKLITKVCQDVIDAGADFIKTSTGKTSEGATLAAAQVILETI
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
KSSAKRIGFKASGGIRNYNQAVAYIELAANILANNFINPQTFRFGVSGLLDNLLNEQQEQ
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
IDDY
HCCC
>Mature Secondary Structure
MITKQEIVSLIDLTQLGDSDTQVDIVNLCSKARNSLGEVAALCVYKQFIPVVKKQLGNNF
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
KVATVVNFPNGDNTIEDMISEVKQALSLGADEIDLVIDYKEYLDQGFSEKSCQMMVEVKK
EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHEEEEHHHHHCCCCCHHHHHHHHHHHH
LCKDKTFKVIIESGELKTAKLITKVCQDVIDAGADFIKTSTGKTSEGATLAAAQVILETI
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
KSSAKRIGFKASGGIRNYNQAVAYIELAANILANNFINPQTFRFGVSGLLDNLLNEQQEQ
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
IDDY
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA