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The map label for this gene is lptD [H]

Identifier: 89256672

GI number: 89256672

Start: 1306156

End: 1306653

Strand: Direct

Name: lptD [H]

Synonym: FTL_1373

Alternate gene names: 89256672

Gene position: 1306156-1306653 (Clockwise)

Preceding gene: 89256668

Following gene: 89256673

Centisome position: 68.89

GC content: 35.54

Gene sequence:

>498_bases
ATGCTGCGTATTACAGGAGAGAATTCAATCAAAGAAGATTGGGGATGTGAGGCTGTTGATGGAGAATGGAGTTGTAAACG
GACAAATAAGCCGATGGACATCTTTGATGATACATTGACAGAAGATGATAGAGAAAAAACTCTAGCGTATGATTTAGCAT
GGGTTAATGAGCCATCGTATCTTGTGGGCGGTTATTATAGTAACGATTACCAATTTACTAAAAAATTATGTGAGTCAGAA
AAAATAGAGCTTGGTTATCAGAATTCAGAATTTCTAAGTGATGGCACTTTGGTTGCATCTGGAAATGTTGAGATGATGAG
TTGTGATCAGGAAATATATGGTAATAATGCTGTAATAAATTTGACTGATGACTTTGCTGGAATAAGATCACTAGTAATGA
CAGGTAATGTTATCGCAAAACAACCATCAACAGGAATATTGATAAGGACTACAGAAATGGGTACCAATATGAATGATGGT
AACTATAGTACTGGTTAA

Upstream 100 bases:

>100_bases
TTAAAAAATTAATAAATTAATAAAGAAATATACATGTTGAAATTAAATTATCAGAAGCTGCTAATTGGTTTTAGTACACT
ATTACTTGTAATTCCAGATA

Downstream 100 bases:

>100_bases
GCATATTTCAGATTTCCAGGAGAAATGCCGGAAACAAGGATATATAATAAACAAAACTTCACTGGTTATATACGCGGTTA
CGCGACAACTCTCAAAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: Organic solvent tolerance protein [H]

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MLRITGENSIKEDWGCEAVDGEWSCKRTNKPMDIFDDTLTEDDREKTLAYDLAWVNEPSYLVGGYYSNDYQFTKKLCESE
KIELGYQNSEFLSDGTLVASGNVEMMSCDQEIYGNNAVINLTDDFAGIRSLVMTGNVIAKQPSTGILIRTTEMGTNMNDG
NYSTG

Sequences:

>Translated_165_residues
MLRITGENSIKEDWGCEAVDGEWSCKRTNKPMDIFDDTLTEDDREKTLAYDLAWVNEPSYLVGGYYSNDYQFTKKLCESE
KIELGYQNSEFLSDGTLVASGNVEMMSCDQEIYGNNAVINLTDDFAGIRSLVMTGNVIAKQPSTGILIRTTEMGTNMNDG
NYSTG
>Mature_165_residues
MLRITGENSIKEDWGCEAVDGEWSCKRTNKPMDIFDDTLTEDDREKTLAYDLAWVNEPSYLVGGYYSNDYQFTKKLCESE
KIELGYQNSEFLSDGTLVASGNVEMMSCDQEIYGNNAVINLTDDFAGIRSLVMTGNVIAKQPSTGILIRTTEMGTNMNDG
NYSTG

Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020889
- InterPro:   IPR005653
- InterPro:   IPR007543 [H]

Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]

EC number: NA

Molecular weight: Translated: 18411; Mature: 18411

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRITGENSIKEDWGCEAVDGEWSCKRTNKPMDIFDDTLTEDDREKTLAYDLAWVNEPSY
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCHHCHHCCCCCCCCEEEEEEEEECCCCE
LVGGYYSNDYQFTKKLCESEKIELGYQNSEFLSDGTLVASGNVEMMSCDQEIYGNNAVIN
EEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCEEEECCEEEEECCHHHCCCCCEEE
LTDDFAGIRSLVMTGNVIAKQPSTGILIRTTEMGTNMNDGNYSTG
ECCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLRITGENSIKEDWGCEAVDGEWSCKRTNKPMDIFDDTLTEDDREKTLAYDLAWVNEPSY
CEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCHHCHHCCCCCCCCEEEEEEEEECCCCE
LVGGYYSNDYQFTKKLCESEKIELGYQNSEFLSDGTLVASGNVEMMSCDQEIYGNNAVIN
EEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCEEEECCEEEEECCHHHCCCCCEEE
LTDDFAGIRSLVMTGNVIAKQPSTGILIRTTEMGTNMNDGNYSTG
ECCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA