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The map label for this gene is yciO [C]

Identifier: 89255812

GI number: 89255812

Start: 371278

End: 371643

Strand: Reverse

Name: yciO [C]

Synonym: FTL_0401

Alternate gene names: 89255812

Gene position: 371643-371278 (Counterclockwise)

Preceding gene: 89255815

Following gene: 89255811

Centisome position: 19.6

GC content: 26.23

Gene sequence:

>366_bases
ATGAAGAGTTTAATCGAATTATATAGTTATGGTAATAATCTTTCTGAACTAAAAGAGCTTGCTAATATTTTAGATAATGA
TGGTATTATAGCTATACCAACTGATTCTGGATATGCTTTAGCTTGTCGCATGAAATCAAAGAAAGGTATAGATAAAATTA
TCAAAATAAGAAATTTTGATAGTAGTCACAACTTTACACTTTGTTGTAAAGATTTATCAGAGATATTTGAATATGCAAAA
GTTGATAATAATGCTTATAGGTTATTAAAAAGATATACTCCTGGCCCATATACATTTATTTTAAATGCGACAAAAAAAGT
ATCATCGTTATTAGGTTCTGTGCACAAAAAACTTAAATTATATTGA

Upstream 100 bases:

>100_bases
ACACAATCGCTGGAAGCAAATCATTAATCATTTTATTCATTTTTATTAATACTAAGTGTTGTATAATAATTTTAGAAGTA
TAACGCTTGTTGTAGAAATT

Downstream 100 bases:

>100_bases
AAATAGCTAAACTGCTGTTATTTAAGATTTGAAAAGCAATAAATATCAATGGTTTAGCAAATGAATTATCATATAAAAGA
AGTATTCTGGTCAATTATTT

Product: Sua5_yciO_yrdC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKSLIELYSYGNNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIFEYAK
VDNNAYRLLKRYTPGPYTFILNATKKVSSLLGSVHKKLKLY

Sequences:

>Translated_121_residues
MKSLIELYSYGNNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIFEYAK
VDNNAYRLLKRYTPGPYTFILNATKKVSSLLGSVHKKLKLY
>Mature_121_residues
MKSLIELYSYGNNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIFEYAK
VDNNAYRLLKRYTPGPYTFILNATKKVSSLLGSVHKKLKLY

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=107, Percent_Identity=44.8598130841121, Blast_Score=102, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 13731; Mature: 13731

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLIELYSYGNNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFD
CHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCC
SSHNFTLCCKDLSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKKVSSLLGSVHKKLKL
CCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCC
Y
C
>Mature Secondary Structure
MKSLIELYSYGNNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFD
CHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHCCCC
SSHNFTLCCKDLSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKKVSSLLGSVHKKLKL
CCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]