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The map label for this gene is pal [H]

Identifier: 89255762

GI number: 89255762

Start: 318483

End: 319106

Strand: Direct

Name: pal [H]

Synonym: FTL_0336

Alternate gene names: 89255762

Gene position: 318483-319106 (Clockwise)

Preceding gene: 89255761

Following gene: 89255763

Centisome position: 16.8

GC content: 34.29

Gene sequence:

>624_bases
ATGATGAAAAAAAGGATAATGAACTTAGCAGTTATAGGTTCTATGCTTATGTTGGCAAGTTGCTCTAGTACTAGACCAGA
TAATAGTGATTTAATCAAAGATAAATATGCTGGAGTAGATAGCTCACAAGCTTTAGAGATGTCTTCGCAGATTTATGGTT
CTGATAAGCTAAGCTCAGATCAAGTTGAGCAAATGAAAAAAGAACTTATGAATATTAATTGTAGATCAGTATATTTTGGT
TTTGATAGCTATAATATTATTGATGACGCTAAAGAATGCCTTGATAAAACGGCAGACTATTTAATAGCTCATCCAGATCA
ACCAATTAAATTATCTGGTAATACTGACCCAAGAGGTAGTGAGAAGTATAACTTTAATCTTGGTCAAAAACGTGCTGAAG
CTGTGTATAATTACCTACTAGGCAAGAATGTTAATAAAGATCAAATCTGTGTAGTAAGCTATGGTAAGCTAAAACCAGCT
GCAGAGCCAACGCAGTTCTATGATGAGTTCTGTAAAGATGGTGTAAATGATGCATGTATGTACAAGGCATCAGAGAAAGC
TTTCTACTTAGACAGAAGAACAGAGATTGATTTTGGTGCTAAATGTGATGAGAGCAATTCATAG

Upstream 100 bases:

>100_bases
AGCCGATAATTATGGCGCAAGTGATACAGGGTTTGCTGATGGTGGTGGTAATTATGTTGTTTCAAGTTTTGATAATGATT
AAAAATAATAGGAGTTAAAA

Downstream 100 bases:

>100_bases
AACTAATAACTAGTCTAAATCTAATCTTACAATTTTATCTTTTACTATTTTTTTATCTTAAATTGTTCTAAAATAGTCGC
ATAATTTTTTGTTTGAATTA

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNIIDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS

Sequences:

>Translated_207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNIIDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS
>Mature_207_residues
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSDQVEQMKKELMNINCRSVYFG
FDSYNIIDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGSEKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPA
AEPTQFYDEFCKDGVNDACMYKASEKAFYLDRRTEIDFGAKCDESNS

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=162, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23292; Mature: 23292

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH
QVEQMKKELMNINCRSVYFGFDSYNIIDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGS
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCEEECCCCCCCCC
EKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPAAEPTQFYDEFCKDGVNDACM
CEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHE
YKASEKAFYLDRRTEIDFGAKCDESNS
EECCCCEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMKKRIMNLAVIGSMLMLASCSSTRPDNSDLIKDKYAGVDSSQALEMSSQIYGSDKLSSD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH
QVEQMKKELMNINCRSVYFGFDSYNIIDDAKECLDKTADYLIAHPDQPIKLSGNTDPRGS
HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCEEECCCCCCCCC
EKYNFNLGQKRAEAVYNYLLGKNVNKDQICVVSYGKLKPAAEPTQFYDEFCKDGVNDACM
CEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHE
YKASEKAFYLDRRTEIDFGAKCDESNS
EECCCCEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]