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The map label for this gene is orn [H]

Identifier: 89255617

GI number: 89255617

Start: 183561

End: 184097

Strand: Direct

Name: orn [H]

Synonym: FTL_0183

Alternate gene names: 89255617

Gene position: 183561-184097 (Clockwise)

Preceding gene: 89255616

Following gene: 89255618

Centisome position: 9.68

GC content: 34.08

Gene sequence:

>537_bases
ATGCAATCAGCAGATAACCTAATCTGGATTGACCTTGAAATGACAGGTCTTGATGTCGATAGTTGCAAAATTATCGAAAT
AGCTGCAATTATTACTGATAAAGATCTAAATATAATCGCTGAAGCAGAGCCAATTGCAATCTATCAGCCTGATGAAGTTT
TAGCCAATATGAATGAATGGTGTATAAAAACTCATACTGAAACAGGACTTACACAAAGAGTCAAAGATAGTAAAATCTCT
ACAGAAGCTGCCGAGCAACAAATTTTAGAATTTATAAGAAAGTTTGTCCCATACCAAAGTTCTCCTTTATGTGGTAATTC
AATTTGGCAAGATAGAAGATTCCTTGCAAAGTATATGCCAAACATAGATGAATACTGTCACTATAGAATGCTAGATGTCA
CTACTCTAAAACTGCTTAATCAGTATTGGGGCGATGGCAAAAGCTTTGAGAAAAAAAATACTCACAAGGCATTAGATGAT
ATTCGCGAATCAATTGCCGAGCTAAAATTTTATCGACAAAAACTTTTATCAATCTAA

Upstream 100 bases:

>100_bases
CTGGTGCAGTTGTTAGAGTTCCTCTTTTTGTACAAACTGGTGAGATTATAAAAGTTGATACAAGAACATCAACTTATGTA
TCTAGAGTCAAGGACTAAGC

Downstream 100 bases:

>100_bases
AATAATTATAACAAATGAAAAAATACTGATTTTAATGATTGCTAGCCTATTAGTCTCTAGCTGTACAATTCACCCTCTTG
GAATACCTGATGAAACATGG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MQSADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKIS
TEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDD
IRESIAELKFYRQKLLSI

Sequences:

>Translated_178_residues
MQSADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKIS
TEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDD
IRESIAELKFYRQKLLSI
>Mature_178_residues
MQSADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKIS
TEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDD
IRESIAELKFYRQKLLSI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=176, Percent_Identity=46.5909090909091, Blast_Score=173, Evalue=6e-44,
Organism=Escherichia coli, GI87082382, Length=178, Percent_Identity=54.4943820224719, Blast_Score=202, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17557752, Length=171, Percent_Identity=49.1228070175439, Blast_Score=164, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6323088, Length=177, Percent_Identity=36.7231638418079, Blast_Score=114, Evalue=6e-27,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=45.9770114942529, Blast_Score=173, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20682; Mature: 20682

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEW
CCCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCEEEECCHHHHHCCHHH
CIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
NIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRESIAELKFYRQKLLSI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEW
CCCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCEEEECCHHHHHCCHHH
CIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
NIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKALDDIRESIAELKFYRQKLLSI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA