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The map label for this gene is fliR [H]

Identifier: 89056678

GI number: 89056678

Start: 4297776

End: 4298546

Strand: Direct

Name: fliR [H]

Synonym: Jann_4187

Alternate gene names: 89056678

Gene position: 4297776-4298546 (Clockwise)

Preceding gene: 89056677

Following gene: 89056679

Centisome position: 99.53

GC content: 57.72

Gene sequence:

>771_bases
ATGATCGACCTGTTGGCCCAGCTTCTTGATCTTTCGGAGATCTGGCTTGCAACTGGTATCGCTGTTTTTCTACGGGTCGG
TGCCTGTTTTCTTGTGCTTCCGGGCCTCGGAGAGCAGATGATCCCCGTCCGCGTTCGACTGGGTGCGGCACTCGCATTTA
CCGTCTTCCTGACGCCCGCTATGCAGCCGGTGCTTTCTGTGAGCGCCGTCATTCCCCCTCTTACAGCATTCTTTTCAGAA
GCAATTGCAGGCCTGATCATCGGTATGGCGCTGCGATATTTGGTCCATGCCTTGCAGGTCGCGGGGACCATCGCGGCGCA
ATCCACATCTCTCAGCCAGATCCTAGGGGGCGCCACACCGGATCCTCTGCCAGCCATGGGCGCCATCCTAATGCTAGGCG
GGCTTACCTTAGCAGTCATTTCCGGCCTTCACGTCCACCTGGTCCAAACATTCCTCCACTCCTACGACGTCCTGCCGTTC
GGAAACCTTCCCGGGCCACGCGACCTTGCGGGTTGGAGTGTGGACCAGGTCAGCGCGAGTTTTTCGCTCGCTGTGTCTCT
CGCCGCGCCGTTTTTGGTTGCATCACTTCTCTACAATGTCGCCCTAGGCGTGATTAATAAAGCGATGCCACAACTGATGG
TCGCATTCGTTGGCGCGCCTGCCATCACGTGGGGTGGGCTGTTTCTCTTGCTGATAACAACGCCCTTCATCCTTCCCGTC
TGGCTACATGCTTTTGAGGGAGCTCTCGCCTCTCCACTTGGGGGGCGATAA

Upstream 100 bases:

>100_bases
TCCGCACCGTCCTGTCCGCCCGAGGTATCCCCAACCCAGTATTTTCATTTGAAGAAATCGGGCTAGAGGCAAAGCCAGCA
CTTGTCGGACTGGCCGCTCC

Downstream 100 bases:

>100_bases
TGAGCGACGACGACACAAGCCCTGGTGACAAGCCGTTTGACGCGACACCCAAGAAGCTTGAGGACGCGCGCAAGAAGGGT
GAAATCGTCCGATCGCAAGA

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIDLLAQLLDLSEIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIPPLTAFFSE
AIAGLIIGMALRYLVHALQVAGTIAAQSTSLSQILGGATPDPLPAMGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPF
GNLPGPRDLAGWSVDQVSASFSLAVSLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPV
WLHAFEGALASPLGGR

Sequences:

>Translated_256_residues
MIDLLAQLLDLSEIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIPPLTAFFSE
AIAGLIIGMALRYLVHALQVAGTIAAQSTSLSQILGGATPDPLPAMGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPF
GNLPGPRDLAGWSVDQVSASFSLAVSLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPV
WLHAFEGALASPLGGR
>Mature_256_residues
MIDLLAQLLDLSEIWLATGIAVFLRVGACFLVLPGLGEQMIPVRVRLGAALAFTVFLTPAMQPVLSVSAVIPPLTAFFSE
AIAGLIIGMALRYLVHALQVAGTIAAQSTSLSQILGGATPDPLPAMGAILMLGGLTLAVISGLHVHLVQTFLHSYDVLPF
GNLPGPRDLAGWSVDQVSASFSLAVSLAAPFLVASLLYNVALGVINKAMPQLMVAFVGAPAITWGGLFLLLITTPFILPV
WLHAFEGALASPLGGR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26639; Mature: 26639

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]