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The map label for this gene is dapB [H]

Identifier: 89056528

GI number: 89056528

Start: 4140461

End: 4141270

Strand: Direct

Name: dapB [H]

Synonym: Jann_4037

Alternate gene names: 89056528

Gene position: 4140461-4141270 (Clockwise)

Preceding gene: 89056522

Following gene: 89056529

Centisome position: 95.89

GC content: 66.79

Gene sequence:

>810_bases
ATGGACAATATGGGTATCGCCGTGATGGGCGCCTCGGGTCGGATGGGCCGGATGCTGATCCAGACGATCACCGCGTCGGA
GCGCGCGCATCTGGTTGCTGTGACCGAACGGCCCGGCCACGATTGGGTGGGGGCGGATCTTGGCGAAGCCCTTGGCGGGT
CCGCGTCCGGCGTGCCGGTCGTCGATGATCCGCTGGAGGCCATCGTGAAGGCCCAAGCGGTGATCGACTTCACGTCGCCG
GAGGCCACGGTCGCTCACGCGAAATTGACCGCACAGGCCCGCGCCGTCCATGTGATCGGCACAACCGGCCTGTCTGACGC
GGATATCGAGGTGCTGGACGCCTGCGCGCGCCACGCCTGTATCGTGCGGGCGGGCAACATGAGCCTTGGCGTGAATCTGC
TTGTGCGGCTGACGCAACAGGTCGCCGCCGCGCTGGACGAGGATTTCGATATCGAGGTGGTGGAGGCGCATCATCGCCAT
AAGGTCGACGCGCCCTCCGGCACCGCTCTGATGTTGGGAGAGGCCGCAGCACAAGGGCGCGGCGTTGATCTGGGCGACGT
GAAAGACAGTGGCCGCGACGGGATCACAGGCGCACGCGGGCGCGGCGATATCGGCTTTTCTGCGATCCGGGGCGGCGATG
TGGTGGGCGAGCATGACGTGATCTTTGCCGCCGATGGGGAGCGCGTCGTGCTGCGCCATCTGGCCACCGACCGGGCGATT
TTTTCACGTGGCGCGTTGAAGGCCGCGCTGTGGGGGCAGGGGCGCGCACCGGGCCATTACTCCATGATGTCGGTCCTGGG
GCTAGCTTGA

Upstream 100 bases:

>100_bases
TTGCCCCAGAGGTAAGGGATGAGGCCGCGTCCCGCAAGCTGGCGCTTCCCTGTCGGGACGGGTTCCGTTACGACCATCCG
CAACGGACATGGAGGCGCAA

Downstream 100 bases:

>100_bases
TCCATGCGGGCGCTGGCCTAACTCTGCGACCAGACGATCTGGATCGGAGGCCTGTCTCATGTCGCTACGCATCACCCTGC
TTGCCGCTCTCGCAGCAATT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MDNMGIAVMGASGRMGRMLIQTITASERAHLVAVTERPGHDWVGADLGEALGGSASGVPVVDDPLEAIVKAQAVIDFTSP
EATVAHAKLTAQARAVHVIGTTGLSDADIEVLDACARHACIVRAGNMSLGVNLLVRLTQQVAAALDEDFDIEVVEAHHRH
KVDAPSGTALMLGEAAAQGRGVDLGDVKDSGRDGITGARGRGDIGFSAIRGGDVVGEHDVIFAADGERVVLRHLATDRAI
FSRGALKAALWGQGRAPGHYSMMSVLGLA

Sequences:

>Translated_269_residues
MDNMGIAVMGASGRMGRMLIQTITASERAHLVAVTERPGHDWVGADLGEALGGSASGVPVVDDPLEAIVKAQAVIDFTSP
EATVAHAKLTAQARAVHVIGTTGLSDADIEVLDACARHACIVRAGNMSLGVNLLVRLTQQVAAALDEDFDIEVVEAHHRH
KVDAPSGTALMLGEAAAQGRGVDLGDVKDSGRDGITGARGRGDIGFSAIRGGDVVGEHDVIFAADGERVVLRHLATDRAI
FSRGALKAALWGQGRAPGHYSMMSVLGLA
>Mature_269_residues
MDNMGIAVMGASGRMGRMLIQTITASERAHLVAVTERPGHDWVGADLGEALGGSASGVPVVDDPLEAIVKAQAVIDFTSP
EATVAHAKLTAQARAVHVIGTTGLSDADIEVLDACARHACIVRAGNMSLGVNLLVRLTQQVAAALDEDFDIEVVEAHHRH
KVDAPSGTALMLGEAAAQGRGVDLGDVKDSGRDGITGARGRGDIGFSAIRGGDVVGEHDVIFAADGERVVLRHLATDRAI
FSRGALKAALWGQGRAPGHYSMMSVLGLA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=44.1947565543071, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27817; Mature: 27817

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNMGIAVMGASGRMGRMLIQTITASERAHLVAVTERPGHDWVGADLGEALGGSASGVPV
CCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCC
VDDPLEAIVKAQAVIDFTSPEATVAHAKLTAQARAVHVIGTTGLSDADIEVLDACARHAC
CCCHHHHHHHHHHEEEECCCCCEEHHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHEE
IVRAGNMSLGVNLLVRLTQQVAAALDEDFDIEVVEAHHRHKVDAPSGTALMLGEAAAQGR
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCEEEEECHHCCCC
GVDLGDVKDSGRDGITGARGRGDIGFSAIRGGDVVGEHDVIFAADGERVVLRHLATDRAI
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCEEEHHHHHHHHHH
FSRGALKAALWGQGRAPGHYSMMSVLGLA
HHCCCCEEEECCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDNMGIAVMGASGRMGRMLIQTITASERAHLVAVTERPGHDWVGADLGEALGGSASGVPV
CCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCC
VDDPLEAIVKAQAVIDFTSPEATVAHAKLTAQARAVHVIGTTGLSDADIEVLDACARHAC
CCCHHHHHHHHHHEEEECCCCCEEHHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHEE
IVRAGNMSLGVNLLVRLTQQVAAALDEDFDIEVVEAHHRHKVDAPSGTALMLGEAAAQGR
EEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCEEEEECHHCCCC
GVDLGDVKDSGRDGITGARGRGDIGFSAIRGGDVVGEHDVIFAADGERVVLRHLATDRAI
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCEEEHHHHHHHHHH
FSRGALKAALWGQGRAPGHYSMMSVLGLA
HHCCCCEEEECCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA