| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056445
Identifier: 89056445
GI number: 89056445
Start: 4053866
End: 4054948
Strand: Direct
Name: 89056445
Synonym: Jann_3954
Alternate gene names: NA
Gene position: 4053866-4054948 (Clockwise)
Preceding gene: 89056442
Following gene: 89056446
Centisome position: 93.88
GC content: 64.73
Gene sequence:
>1083_bases ATGTCGCCCCGCGCTGGTGCCAGAAATCTACTGCTGAACTGCGCGCAGGTGCGGGCCGGGCAAAGTCTTCTGATCGCCTA TGAGCCTGCCCGGTTTGGGTACTTTGACGAGGAGGCCGTGGTTTGCGTCGCCCAGGAGGCGCGCGACCTGGGCCTGCATG TGCGCACCTGCGATGTGGGGTTCAAAGCCACCAAGCCTCACCTGTCCACCATCCTTCTGGACCAGATGCGCCACGCGGAT ATCGTCATTTTCTTTGCGCGCCTCGGCGATCAATTGCGGTTCTGCGAGATGCCTGCGGGCAAGACCATCATCACCAGTTT CGCCGCCACGACTGAACTTCTGGGGTCTGGCTTCGGGACGGGCCATTATGGCGCATTCAGCGCGCTCAAGGCGGCGGTGG ACAAGGCGCTGGCAAATGCAAGCGACGTGCGGCTGACCTGCGAAAACGGCACCGACGTCCGGGGCACGCCTCGGCCCAAC GGCACGGAAACCTCGGTCACGCGCTTTCCACTGTCGGTTTTTGCGCCAATCCCGGCGCAGGATTTCTCGGGCCGGGTGGC GATGGCGGGGTTCCTGACCGGCACCGGGTCACGCTACTATGCGCCCTACAATCTGGACCTCGACGGGCCGCTATTTGCGT ATCTCGACAACGGGCGGCTCACGCGGTTTGAAGGCTCCGCGCAGGCCGTGCGCCACGCCAATGACCATTACGACCGCGTG GCAGAGCGCTTCGATCTTGATCGTAACGCCATCCCTTCCTGGCACGCGGGCATCCACCCCGGCTGCGGTTTCCCGTGGGA CATGGCCGACCATCCCGAGCGGTGGGGCGGCACCGCGTTTGGCAATCCGCGTATCGCCCATTTCCACACCTGCGGCAGCG ACGCGCCGGGGGAAATCAGCTGGAACGTCATCGACCCGACAATCACGTTGGACGGTGTTCCGATGTGGGACAACGGGACG TTCCACGCGCACCGTATCCCCGGCGGGGCCGCGATCCTGGCCCGATATCCTGACGTCGCCGACATGTTCGCCCGGCCCGA CCAGTCTATTGGCATCGCCGCACCCGCGTTCGCGGTGGCTTGA
Upstream 100 bases:
>100_bases TAAGCGAGGCTAATGGAATACATTAACACTTTCAAATGGAACGATACCCCCACGCAGCCATAGGTTGAACCGGTCGGCTG CCCGACGAAGGATGCAACCC
Downstream 100 bases:
>100_bases ACGCCCCTGCGTGACGCCTATACTTCACGTAATGTCGGCGGGCGAGTACGCGGGCATGGTGCGGAGCACTCCCGTCTCCG GTGGTGATGCGGCAGGCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MSPRAGARNLLLNCAQVRAGQSLLIAYEPARFGYFDEEAVVCVAQEARDLGLHVRTCDVGFKATKPHLSTILLDQMRHAD IVIFFARLGDQLRFCEMPAGKTIITSFAATTELLGSGFGTGHYGAFSALKAAVDKALANASDVRLTCENGTDVRGTPRPN GTETSVTRFPLSVFAPIPAQDFSGRVAMAGFLTGTGSRYYAPYNLDLDGPLFAYLDNGRLTRFEGSAQAVRHANDHYDRV AERFDLDRNAIPSWHAGIHPGCGFPWDMADHPERWGGTAFGNPRIAHFHTCGSDAPGEISWNVIDPTITLDGVPMWDNGT FHAHRIPGGAAILARYPDVADMFARPDQSIGIAAPAFAVA
Sequences:
>Translated_360_residues MSPRAGARNLLLNCAQVRAGQSLLIAYEPARFGYFDEEAVVCVAQEARDLGLHVRTCDVGFKATKPHLSTILLDQMRHAD IVIFFARLGDQLRFCEMPAGKTIITSFAATTELLGSGFGTGHYGAFSALKAAVDKALANASDVRLTCENGTDVRGTPRPN GTETSVTRFPLSVFAPIPAQDFSGRVAMAGFLTGTGSRYYAPYNLDLDGPLFAYLDNGRLTRFEGSAQAVRHANDHYDRV AERFDLDRNAIPSWHAGIHPGCGFPWDMADHPERWGGTAFGNPRIAHFHTCGSDAPGEISWNVIDPTITLDGVPMWDNGT FHAHRIPGGAAILARYPDVADMFARPDQSIGIAAPAFAVA >Mature_359_residues SPRAGARNLLLNCAQVRAGQSLLIAYEPARFGYFDEEAVVCVAQEARDLGLHVRTCDVGFKATKPHLSTILLDQMRHADI VIFFARLGDQLRFCEMPAGKTIITSFAATTELLGSGFGTGHYGAFSALKAAVDKALANASDVRLTCENGTDVRGTPRPNG TETSVTRFPLSVFAPIPAQDFSGRVAMAGFLTGTGSRYYAPYNLDLDGPLFAYLDNGRLTRFEGSAQAVRHANDHYDRVA ERFDLDRNAIPSWHAGIHPGCGFPWDMADHPERWGGTAFGNPRIAHFHTCGSDAPGEISWNVIDPTITLDGVPMWDNGTF HAHRIPGGAAILARYPDVADMFARPDQSIGIAAPAFAVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38910; Mature: 38779
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPRAGARNLLLNCAQVRAGQSLLIAYEPARFGYFDEEAVVCVAQEARDLGLHVRTCDVG CCCCCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCEEEEEEHHHHHCCCEEEEECCC FKATKPHLSTILLDQMRHADIVIFFARLGDQLRFCEMPAGKTIITSFAATTELLGSGFGT CCCCCCHHHHHHHHHHCCCCEEEEEEHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC GHYGAFSALKAAVDKALANASDVRLTCENGTDVRGTPRPNGTETSVTRFPLSVFAPIPAQ CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCEEECCCCCC DFSGRVAMAGFLTGTGSRYYAPYNLDLDGPLFAYLDNGRLTRFEGSAQAVRHANDHYDRV CCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHCCHHHHHH AERFDLDRNAIPSWHAGIHPGCGFPWDMADHPERWGGTAFGNPRIAHFHTCGSDAPGEIS HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCCCEEE WNVIDPTITLDGVPMWDNGTFHAHRIPGGAAILARYPDVADMFARPDQSIGIAAPAFAVA EEEECCEEEECCEEECCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCCEECCHHHCC >Mature Secondary Structure SPRAGARNLLLNCAQVRAGQSLLIAYEPARFGYFDEEAVVCVAQEARDLGLHVRTCDVG CCCCCHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCEEEEEEHHHHHCCCEEEEECCC FKATKPHLSTILLDQMRHADIVIFFARLGDQLRFCEMPAGKTIITSFAATTELLGSGFGT CCCCCCHHHHHHHHHHCCCCEEEEEEHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC GHYGAFSALKAAVDKALANASDVRLTCENGTDVRGTPRPNGTETSVTRFPLSVFAPIPAQ CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCEEECCCCCC DFSGRVAMAGFLTGTGSRYYAPYNLDLDGPLFAYLDNGRLTRFEGSAQAVRHANDHYDRV CCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHCCHHHHHH AERFDLDRNAIPSWHAGIHPGCGFPWDMADHPERWGGTAFGNPRIAHFHTCGSDAPGEIS HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEECCCCCCCEEE WNVIDPTITLDGVPMWDNGTFHAHRIPGGAAILARYPDVADMFARPDQSIGIAAPAFAVA EEEECCEEEECCEEECCCCCEEEEECCCCEEEEECCCCHHHHHCCCCCCCCEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA