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The map label for this gene is yybE [H]

Identifier: 89056189

GI number: 89056189

Start: 3780422

End: 3781384

Strand: Direct

Name: yybE [H]

Synonym: Jann_3698

Alternate gene names: 89056189

Gene position: 3780422-3781384 (Clockwise)

Preceding gene: 89056188

Following gene: 89056193

Centisome position: 87.55

GC content: 65.32

Gene sequence:

>963_bases
ATGTCGCCGGTGGTGCTGAAAGGGGTCACGCTGCGCGGGTTGGAGGTGTTCGAGACGTTGGCCCGCACCGGGTCGGTCGC
CGCAACGGCCGCCGATCTGGGCATGAGCGCGCCCGCCGTATCACAACAGATGAAGAACCTGTCGACCGCATTGGGCGTCG
ATCTGGTCGATGCGTCGCGCCGCCCGATGGTGGTGACGCCCGCCGGACGGCTGTTTCTGGTCAAGGCGAAGGAGGCGTTG
CGGGCGCTGCGGGCAGGTCAACGGGATCTGAAAGCGCTGGATCTGAGCGATATGGAATCGCTGTCGCTGGGGGTGATCGA
AGATTTCGAGAACGAGGTGACGCCACTTCTGGCGACGCGTCTGGCCGAGGCGATGAGCCAATGCGCCTTTGTGTTGCAGA
CCGGCGCGAGCCACGTCTTGCAGGCCCGCATCGCCGCGCGCGAGCTGGACATGGTGATCTGTGCCGCCGGTGACGTCGCG
CCGCGGGGCACGATTGCGCTGCCGTTGCTGGATGACCCCTATATTCTGGCCGTTCCCAAAGGGGTGTCGGTCAGCCGGGG
GCTGGCGTCGCTGAGCGATCTGCCGTTCCTGCGGCGCGATCTGGATCAGGTGATGGGCCAACAGATCGAGGCGTATCTGG
AGCGGGCGGGCCAGACCCCGCCCCGGCGGTTTGAGATGGATTCCAATCAATCGATTTCAGCGCTGGTGGCCGCAGGGACT
GGCTGGACCATCACCACCGCGCTGTCGCTTGCCCGGGCCGGACGATTTGCCAGCGGGATTGAGGCGCATCCCCTGCCCGG
GGAGGCGATGGCTCGCCAGATCGTGCTTTATGCCACGTCCGATTGGGCCGGGGGCATTCCGGACCAGATCTCGGACCTGG
CGCGCGAATTGATCGGGCTGCATTTCACGGACCCGGGGCTGGAGCAAATGCCCTGGCTTGGCAGTCAATTTCGAGTTTTG
TGA

Upstream 100 bases:

>100_bases
GGAGCTGCTGTCGCATCTGCCCGACGTCAATACCGCCCCTGCCGCCCAGGGCATCGCCGTGGCGCCGGAGTTGCTGGCGC
AGATCGTGAACGCCTAAGCC

Downstream 100 bases:

>100_bases
AGAATATCCCCGCGCTTGCGCGCGGCGACCGGGCGGGGGGCCAGCCCCCCGCACCCCCCGGGATATTTACCGAACGGGGA
ATTGGGGGGGCGGTGCCAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSPVVLKGVTLRGLEVFETLARTGSVAATAADLGMSAPAVSQQMKNLSTALGVDLVDASRRPMVVTPAGRLFLVKAKEAL
RALRAGQRDLKALDLSDMESLSLGVIEDFENEVTPLLATRLAEAMSQCAFVLQTGASHVLQARIAARELDMVICAAGDVA
PRGTIALPLLDDPYILAVPKGVSVSRGLASLSDLPFLRRDLDQVMGQQIEAYLERAGQTPPRRFEMDSNQSISALVAAGT
GWTITTALSLARAGRFASGIEAHPLPGEAMARQIVLYATSDWAGGIPDQISDLARELIGLHFTDPGLEQMPWLGSQFRVL

Sequences:

>Translated_320_residues
MSPVVLKGVTLRGLEVFETLARTGSVAATAADLGMSAPAVSQQMKNLSTALGVDLVDASRRPMVVTPAGRLFLVKAKEAL
RALRAGQRDLKALDLSDMESLSLGVIEDFENEVTPLLATRLAEAMSQCAFVLQTGASHVLQARIAARELDMVICAAGDVA
PRGTIALPLLDDPYILAVPKGVSVSRGLASLSDLPFLRRDLDQVMGQQIEAYLERAGQTPPRRFEMDSNQSISALVAAGT
GWTITTALSLARAGRFASGIEAHPLPGEAMARQIVLYATSDWAGGIPDQISDLARELIGLHFTDPGLEQMPWLGSQFRVL
>Mature_319_residues
SPVVLKGVTLRGLEVFETLARTGSVAATAADLGMSAPAVSQQMKNLSTALGVDLVDASRRPMVVTPAGRLFLVKAKEALR
ALRAGQRDLKALDLSDMESLSLGVIEDFENEVTPLLATRLAEAMSQCAFVLQTGASHVLQARIAARELDMVICAAGDVAP
RGTIALPLLDDPYILAVPKGVSVSRGLASLSDLPFLRRDLDQVMGQQIEAYLERAGQTPPRRFEMDSNQSISALVAAGTG
WTITTALSLARAGRFASGIEAHPLPGEAMARQIVLYATSDWAGGIPDQISDLARELIGLHFTDPGLEQMPWLGSQFRVL

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=232, Percent_Identity=30.6034482758621, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790399, Length=258, Percent_Identity=27.5193798449612, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34086; Mature: 33955

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVVLKGVTLRGLEVFETLARTGSVAATAADLGMSAPAVSQQMKNLSTALGVDLVDASR
CCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEECCCC
RPMVVTPAGRLFLVKAKEALRALRAGQRDLKALDLSDMESLSLGVIEDFENEVTPLLATR
CCEEECCCCCEEEEEHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAEAMSQCAFVLQTGASHVLQARIAARELDMVICAAGDVAPRGTIALPLLDDPYILAVPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCEEEEEECCCCEEEEECC
GVSVSRGLASLSDLPFLRRDLDQVMGQQIEAYLERAGQTPPRRFEMDSNQSISALVAAGT
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCC
GWTITTALSLARAGRFASGIEAHPLPGEAMARQIVLYATSDWAGGIPDQISDLARELIGL
CCHHHHHHHHHHHCCHHCCCCCCCCCHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHCC
HFTDPGLEQMPWLGSQFRVL
CCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
SPVVLKGVTLRGLEVFETLARTGSVAATAADLGMSAPAVSQQMKNLSTALGVDLVDASR
CCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEECCCC
RPMVVTPAGRLFLVKAKEALRALRAGQRDLKALDLSDMESLSLGVIEDFENEVTPLLATR
CCEEECCCCCEEEEEHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAEAMSQCAFVLQTGASHVLQARIAARELDMVICAAGDVAPRGTIALPLLDDPYILAVPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCEEEEEECCCCEEEEECC
GVSVSRGLASLSDLPFLRRDLDQVMGQQIEAYLERAGQTPPRRFEMDSNQSISALVAAGT
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCC
GWTITTALSLARAGRFASGIEAHPLPGEAMARQIVLYATSDWAGGIPDQISDLARELIGL
CCHHHHHHHHHHHCCHHCCCCCCCCCHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHCC
HFTDPGLEQMPWLGSQFRVL
CCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]