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The map label for this gene is yfdC [H]

Identifier: 89056058

GI number: 89056058

Start: 3632194

End: 3633000

Strand: Direct

Name: yfdC [H]

Synonym: Jann_3567

Alternate gene names: 89056058

Gene position: 3632194-3633000 (Clockwise)

Preceding gene: 89056057

Following gene: 89056060

Centisome position: 84.12

GC content: 57.74

Gene sequence:

>807_bases
ATGCGCGAAGAGATGGCCGTCCGGGAGGCGACACGCCTCAGTTCCAAACTGATCTATGAGGTTATCCGTCGCGACGGTGA
AGAGGAATTAGAGCGCCCCACACGGTCGCTCGTCTGGTCAGGCATCGCCGCCGGTATCCTGATTTCCTTCTCCGTTCTGG
GAGAGGCAATCTTTCGAACATATTTGCCGGACGCGCCCTGGCGGTTCCTTCTAGAAAACCTCGGTTACAGTCTTGGTTTC
CTACTGGTCATTCTGGGCCGAATGCAATTGTTCACGGAAAACACCATCACCACAATCCTTCCGTTGGTTGCAGAACGGTC
CAGCCGCTGTCTGACGTCGGTCCTGCGGTTGTGGAGCATTGTCTTGATCGCAAACATCGTGGGGGCCTTCGTCGCGGCGG
CGTTTATGACCCAAACCTCTGGCATAGCGCCTGATCTACTGACCACGATCAACGAACTGTCGCGCCATGCGACTGGCTTT
TCGGCGACCGAAGGCTTCATCCGCGCGATCCCTGCCGGTGTTCTGGTGGCCTCCATCGTTTGGATGATGCCAAGTCAAAA
CGGGGGCGAGGTGATGCTGATCGTCATCTTCACCTGGCTCATCGCGGCGGGCGATTTCACGCACATCATTGCAGGCTCGG
TAGAGATGTGGGTGCTGATCTTGCAGGGTGATCTTGGTGCGTCCGTCGCGGCCTTCAGGTTCTTCGTGCCGGTTCTCGCC
GGAAATATCGTGGGTGGAACGCTGGTGTTCGCGCTTCTGGCCTGGGGCCAGGTGAAGGATGAGGTGGAATTACGCGACGA
ACCCTAG

Upstream 100 bases:

>100_bases
CCATGCCGTCTACCAGGCGCCACTGCCAACCATTCCGACATTATTTTGTGGAACCTCGTGTCACGCCCGCGCGTTGAAGG
CAGAACCACGAGGAAATGAC

Downstream 100 bases:

>100_bases
AGTGTTTGGAACCTTCCAGACCGCAAGCGCGTTGATCCTCCTGATATAAGAGGAGAGCTATAATGTCCGCACCAGACACC
AACATCGAACGTCAGACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MREEMAVREATRLSSKLIYEVIRRDGEEELERPTRSLVWSGIAAGILISFSVLGEAIFRTYLPDAPWRFLLENLGYSLGF
LLVILGRMQLFTENTITTILPLVAERSSRCLTSVLRLWSIVLIANIVGAFVAAAFMTQTSGIAPDLLTTINELSRHATGF
SATEGFIRAIPAGVLVASIVWMMPSQNGGEVMLIVIFTWLIAAGDFTHIIAGSVEMWVLILQGDLGASVAAFRFFVPVLA
GNIVGGTLVFALLAWGQVKDEVELRDEP

Sequences:

>Translated_268_residues
MREEMAVREATRLSSKLIYEVIRRDGEEELERPTRSLVWSGIAAGILISFSVLGEAIFRTYLPDAPWRFLLENLGYSLGF
LLVILGRMQLFTENTITTILPLVAERSSRCLTSVLRLWSIVLIANIVGAFVAAAFMTQTSGIAPDLLTTINELSRHATGF
SATEGFIRAIPAGVLVASIVWMMPSQNGGEVMLIVIFTWLIAAGDFTHIIAGSVEMWVLILQGDLGASVAAFRFFVPVLA
GNIVGGTLVFALLAWGQVKDEVELRDEP
>Mature_268_residues
MREEMAVREATRLSSKLIYEVIRRDGEEELERPTRSLVWSGIAAGILISFSVLGEAIFRTYLPDAPWRFLLENLGYSLGF
LLVILGRMQLFTENTITTILPLVAERSSRCLTSVLRLWSIVLIANIVGAFVAAAFMTQTSGIAPDLLTTINELSRHATGF
SATEGFIRAIPAGVLVASIVWMMPSQNGGEVMLIVIFTWLIAAGDFTHIIAGSVEMWVLILQGDLGASVAAFRFFVPVLA
GNIVGGTLVFALLAWGQVKDEVELRDEP

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=265, Percent_Identity=41.5094339622642, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 29332; Mature: 29332

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREEMAVREATRLSSKLIYEVIRRDGEEELERPTRSLVWSGIAAGILISFSVLGEAIFRT
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLPDAPWRFLLENLGYSLGFLLVILGRMQLFTENTITTILPLVAERSSRCLTSVLRLWSI
HCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIANIVGAFVAAAFMTQTSGIAPDLLTTINELSRHATGFSATEGFIRAIPAGVLVASIV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
WMMPSQNGGEVMLIVIFTWLIAAGDFTHIIAGSVEMWVLILQGDLGASVAAFRFFVPVLA
HHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHH
GNIVGGTLVFALLAWGQVKDEVELRDEP
HHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MREEMAVREATRLSSKLIYEVIRRDGEEELERPTRSLVWSGIAAGILISFSVLGEAIFRT
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLPDAPWRFLLENLGYSLGFLLVILGRMQLFTENTITTILPLVAERSSRCLTSVLRLWSI
HCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIANIVGAFVAAAFMTQTSGIAPDLLTTINELSRHATGFSATEGFIRAIPAGVLVASIV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
WMMPSQNGGEVMLIVIFTWLIAAGDFTHIIAGSVEMWVLILQGDLGASVAAFRFFVPVLA
HHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHH
GNIVGGTLVFALLAWGQVKDEVELRDEP
HHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]