| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is pdhA [H]
Identifier: 89056048
GI number: 89056048
Start: 3620651
End: 3623038
Strand: Direct
Name: pdhA [H]
Synonym: Jann_3557
Alternate gene names: 89056048
Gene position: 3620651-3623038 (Clockwise)
Preceding gene: 89056047
Following gene: 89056057
Centisome position: 83.85
GC content: 64.11
Gene sequence:
>2388_bases ATGGCAAGCGCGTCGGACATTCGCCACGCTCTGGAACGGAAAACCCTGTGGCTGTCGTCGTGGATGATCCACAACGCCAA CAACATTCGCGAGAAGGGCCGGATCAAGGTCGGCGGCCATCAGGCGTCGTCGGCATCGATGAACGCCATCCTGAACGCGC TCTACTTCGATGTGCTGCGGCCGGAAGACCGCGTGGCCGTCAAGCCCCATGCCAGCCCGGTCTTCCATGCGATCCAGTAT CTTCTGGGCAATCAGACCCGTGATCAGTTGGAGGCCTTCCGCGCCAAGGGCGGCGCGCAACCCTATCCGTCCCGCACCAA GGACCGGGACGATGTGGATTTCTCCACCGGGTCCGTGGGTATGGGCGTCGCCATGACCGCATTCGCGTCAATGACGCAGG ATTATCTGGCCGGGCACGGGTGGCTGGATCGTCCCAAGGGCCGGATGATCGCCCTCGTCGGCGACGCGGAACTGGATGAA GGCAATATCTACGAGGCGCTTCTTGAAGGGGCCAAGCACGATCTGCGCAATTGCTGGTGGATCATCGACTACAACCGCCA ATCCCTTGACGGGGTGGTGACGCAGGGCTTGAACGCGCGGTTTCGGGATATCTTCGTGGCCTGCGGCTGGGATGTGCTGG AGCTGAAATACGGCACCCTCATGCAGGATGCCTTCGCCCGCCCCGGTGGGACGCAATTGAAGGCGTGGATCGACGGCTGT GACAACAACCTCTATTCCGCGCTGACCTTCAAGGGCGGGGCCGCGTGGCGGGCGCAGATGGAGGGGGATTTCACGGGCGA CAACGAGGCTCTGGCGCTTTTGGCCGATCATAGTGACGCAGAGCTGGCGCGGTTGATGGGCAACCTCGCGGGCCATGATG CTGCGTTGGTGGCGCAGACAATGAAGGCCATCGACCATGACCGTCCGGTCTGTTTCATCTGCTACACGGTCAAGGGCCAC GGGCTGCCGCTGGCGGGCCACAAGGACAACCATGCCGGGATCATGACCAGTGCCCAGATCGAGGATCTGCGCGACACGAT GGGCATAGCCGTCGGAGCGGAATGGGAGGCCTTTGCAGGCATCGACATCCCCGAGGCGGAGGTCAGGGATTTCCTGGACA CCGTACCGTTCAACGCCGAGGGGCAACGCCGTCTGAACGCGAACCCCGTGCCCACCTACGACCGCGTTGATCCACGGATC AAAGGCGTCACCTCCACCCAGGAGGCGTTTGGCAAGATCCTCGCGGCCATCGCCTCGGACGCGCCGGATCTGGCGGAGCG CATTGTCACGACCTCTCCGGATGTCTCCGTGTCCACCAACCTCGGGCCGTGGATCAACAAGACCGGCCTTTTCGCCAAAA CGGATCAGGCCGATGTCTTCCGCGATCAATCCGTGCCGTCGGTGCAGAAATGGCGACGCCACGGGGGCGGGCGGCATATG GAGCTTGGGATTGCCGAGAACAACCTGTTCACCTTCCTCGGCGCGCTTGGCCTGTCGCATTCCCTGTTCGGTCAACGGCT GCTGCCGGTGGGCACGGTCTACGATCCGTTCATCTGCCGTGGCCTCGATGCGCTGAACTACGCCTGCTACCAGGATGCGC GGTTCATGCTGGCGGCAACGCCATCGGGCGTGTCGCTCAGCCATGAAGGCGGCGCGCACCAATCTATTTCGACACCGCTG ATCGGCATGGCGCAGGATGGTCTGGCGAGCTTTGAGCCCGCGTTTGCCGACGAGTTGGCGACGATCATGCGGTGGGGGTT CGACTACATGCAACGCGACGGGTCCGGTGATCCGTCCGAGGATAACTGGCTGCGCGACGAGACCGGCGGTTCTGTCTATC TGCGGCTGTCGACCGTGCCGCTTGAGCAGATCGACCGCACCACGGACGCGGCGTTTGAGACGGGCGTGCTTGATGGTGGT TACTGGCTACGCCGACCGGAGCCCGGTACCCGTGTCGCCATTGCCTATACGGGCGTCGTCGCGCCGGAAGCCATCCGCGC GGCGGGCCTTCTGTCCGAGACCATGCGCGGCATCGGCGTGTTGGCCATCACGTCCGCCGACCGTCTGAACGCCGGGTGGC AGGCGGCGGAGCGGGCCCGCCAACGGGGCCAGACGGGCGTCAGGTCAACGATTGAAACCTTGCTGGCCGATCTGCCGTCT GATGCGGGCCTCGTGACCGTCGCCGACGCCCACCCTGTGACCCTGTCTTGGCTGGGTGGGGTCGAGGGTCACCGGGTGAA ATCCCTTGGAGTGGAGCATTTCGGACAGGCCGGAACCGTGGACGACATCTACCGCCTGCACGGAATTGATGCCAACGCCA TTCAACACGCGGCCATGGCGCTGATGGGCGGACAGAGCGCGCGCTACGCGCAACCGCTACCCGGCTGA
Upstream 100 bases:
>100_bases GCTGGCGATACTTTGGGCTTACGGATCATGACTGAGAATGTGCACCTTTTCGCTGAAGGAGGTGCGGCCCTGCCCGCCTC GTGCCGTCGGGCAGCCTGAC
Downstream 100 bases:
>100_bases TGCCAGCCCGACCGCTCAACCTGATGCGTAAGCCGGGATGAGACGCACCGCACCGTAAGGCGGGGTTTCGCAAAACCTCG CTTTTTAGACATGTCTTATT
Product: transketolase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 794
Protein sequence:
>795_residues MASASDIRHALERKTLWLSSWMIHNANNIREKGRIKVGGHQASSASMNAILNALYFDVLRPEDRVAVKPHASPVFHAIQY LLGNQTRDQLEAFRAKGGAQPYPSRTKDRDDVDFSTGSVGMGVAMTAFASMTQDYLAGHGWLDRPKGRMIALVGDAELDE GNIYEALLEGAKHDLRNCWWIIDYNRQSLDGVVTQGLNARFRDIFVACGWDVLELKYGTLMQDAFARPGGTQLKAWIDGC DNNLYSALTFKGGAAWRAQMEGDFTGDNEALALLADHSDAELARLMGNLAGHDAALVAQTMKAIDHDRPVCFICYTVKGH GLPLAGHKDNHAGIMTSAQIEDLRDTMGIAVGAEWEAFAGIDIPEAEVRDFLDTVPFNAEGQRRLNANPVPTYDRVDPRI KGVTSTQEAFGKILAAIASDAPDLAERIVTTSPDVSVSTNLGPWINKTGLFAKTDQADVFRDQSVPSVQKWRRHGGGRHM ELGIAENNLFTFLGALGLSHSLFGQRLLPVGTVYDPFICRGLDALNYACYQDARFMLAATPSGVSLSHEGGAHQSISTPL IGMAQDGLASFEPAFADELATIMRWGFDYMQRDGSGDPSEDNWLRDETGGSVYLRLSTVPLEQIDRTTDAAFETGVLDGG YWLRRPEPGTRVAIAYTGVVAPEAIRAAGLLSETMRGIGVLAITSADRLNAGWQAAERARQRGQTGVRSTIETLLADLPS DAGLVTVADAHPVTLSWLGGVEGHRVKSLGVEHFGQAGTVDDIYRLHGIDANAIQHAAMALMGGQSARYAQPLPG
Sequences:
>Translated_795_residues MASASDIRHALERKTLWLSSWMIHNANNIREKGRIKVGGHQASSASMNAILNALYFDVLRPEDRVAVKPHASPVFHAIQY LLGNQTRDQLEAFRAKGGAQPYPSRTKDRDDVDFSTGSVGMGVAMTAFASMTQDYLAGHGWLDRPKGRMIALVGDAELDE GNIYEALLEGAKHDLRNCWWIIDYNRQSLDGVVTQGLNARFRDIFVACGWDVLELKYGTLMQDAFARPGGTQLKAWIDGC DNNLYSALTFKGGAAWRAQMEGDFTGDNEALALLADHSDAELARLMGNLAGHDAALVAQTMKAIDHDRPVCFICYTVKGH GLPLAGHKDNHAGIMTSAQIEDLRDTMGIAVGAEWEAFAGIDIPEAEVRDFLDTVPFNAEGQRRLNANPVPTYDRVDPRI KGVTSTQEAFGKILAAIASDAPDLAERIVTTSPDVSVSTNLGPWINKTGLFAKTDQADVFRDQSVPSVQKWRRHGGGRHM ELGIAENNLFTFLGALGLSHSLFGQRLLPVGTVYDPFICRGLDALNYACYQDARFMLAATPSGVSLSHEGGAHQSISTPL IGMAQDGLASFEPAFADELATIMRWGFDYMQRDGSGDPSEDNWLRDETGGSVYLRLSTVPLEQIDRTTDAAFETGVLDGG YWLRRPEPGTRVAIAYTGVVAPEAIRAAGLLSETMRGIGVLAITSADRLNAGWQAAERARQRGQTGVRSTIETLLADLPS DAGLVTVADAHPVTLSWLGGVEGHRVKSLGVEHFGQAGTVDDIYRLHGIDANAIQHAAMALMGGQSARYAQPLPG >Mature_794_residues ASASDIRHALERKTLWLSSWMIHNANNIREKGRIKVGGHQASSASMNAILNALYFDVLRPEDRVAVKPHASPVFHAIQYL LGNQTRDQLEAFRAKGGAQPYPSRTKDRDDVDFSTGSVGMGVAMTAFASMTQDYLAGHGWLDRPKGRMIALVGDAELDEG NIYEALLEGAKHDLRNCWWIIDYNRQSLDGVVTQGLNARFRDIFVACGWDVLELKYGTLMQDAFARPGGTQLKAWIDGCD NNLYSALTFKGGAAWRAQMEGDFTGDNEALALLADHSDAELARLMGNLAGHDAALVAQTMKAIDHDRPVCFICYTVKGHG LPLAGHKDNHAGIMTSAQIEDLRDTMGIAVGAEWEAFAGIDIPEAEVRDFLDTVPFNAEGQRRLNANPVPTYDRVDPRIK GVTSTQEAFGKILAAIASDAPDLAERIVTTSPDVSVSTNLGPWINKTGLFAKTDQADVFRDQSVPSVQKWRRHGGGRHME LGIAENNLFTFLGALGLSHSLFGQRLLPVGTVYDPFICRGLDALNYACYQDARFMLAATPSGVSLSHEGGAHQSISTPLI GMAQDGLASFEPAFADELATIMRWGFDYMQRDGSGDPSEDNWLRDETGGSVYLRLSTVPLEQIDRTTDAAFETGVLDGGY WLRRPEPGTRVAIAYTGVVAPEAIRAAGLLSETMRGIGVLAITSADRLNAGWQAAERARQRGQTGVRSTIETLLADLPSD AGLVTVADAHPVTLSWLGGVEGHRVKSLGVEHFGQAGTVDDIYRLHGIDANAIQHAAMALMGGQSARYAQPLPG
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=788, Percent_Identity=22.9695431472081, Blast_Score=128, Evalue=2e-30,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 86144; Mature: 86013
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASASDIRHALERKTLWLSSWMIHNANNIREKGRIKVGGHQASSASMNAILNALYFDVLR CCCHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCC PEDRVAVKPHASPVFHAIQYLLGNQTRDQLEAFRAKGGAQPYPSRTKDRDDVDFSTGSVG CCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC MGVAMTAFASMTQDYLAGHGWLDRPKGRMIALVGDAELDEGNIYEALLEGAKHDLRNCWW HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEE IIDYNRQSLDGVVTQGLNARFRDIFVACGWDVLELKYGTLMQDAFARPGGTQLKAWIDGC EEECCCCHHHHHHHCCCCCHHHEEEEECCCEEEEEHHHHHHHHHHCCCCCCEEHHHHCCC DNNLYSALTFKGGAAWRAQMEGDFTGDNEALALLADHSDAELARLMGNLAGHDAALVAQT CCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHH MKAIDHDRPVCFICYTVKGHGLPLAGHKDNHAGIMTSAQIEDLRDTMGIAVGAEWEAFAG HHHHCCCCCEEEEEEEECCCCEECCCCCCCCCCEEEHHHHHHHHHHHCEEECCCCCCCCC IDIPEAEVRDFLDTVPFNAEGQRRLNANPVPTYDRVDPRIKGVTSTQEAFGKILAAIASD CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC APDLAERIVTTSPDVSVSTNLGPWINKTGLFAKTDQADVFRDQSVPSVQKWRRHGGGRHM CHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHCCCCCHHHHHHHCCCCCEE ELGIAENNLFTFLGALGLSHSLFGQRLLPVGTVYDPFICRGLDALNYACYQDARFMLAAT EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHCCEEEEEEC PSGVSLSHEGGAHQSISTPLIGMAQDGLASFEPAFADELATIMRWGFDYMQRDGSGDPSE CCCCEECCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHCHHHHHCCCCCCCCC DNWLRDETGGSVYLRLSTVPLEQIDRTTDAAFETGVLDGGYWLRRPEPGTRVAIAYTGVV CCCCCCCCCCEEEEEEECCCHHHHHCHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCC APEAIRAAGLLSETMRGIGVLAITSADRLNAGWQAAERARQRGQTGVRSTIETLLADLPS CHHHHHHHHHHHHHHHCCEEEEEECCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC DAGLVTVADAHPVTLSWLGGVEGHRVKSLGVEHFGQAGTVDDIYRLHGIDANAIQHAAMA CCCEEEEECCCCEEEEECCCCCCCHHHHHCHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH LMGGQSARYAQPLPG HHCCCCCCCCCCCCC >Mature Secondary Structure ASASDIRHALERKTLWLSSWMIHNANNIREKGRIKVGGHQASSASMNAILNALYFDVLR CCHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCC PEDRVAVKPHASPVFHAIQYLLGNQTRDQLEAFRAKGGAQPYPSRTKDRDDVDFSTGSVG CCCCEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC MGVAMTAFASMTQDYLAGHGWLDRPKGRMIALVGDAELDEGNIYEALLEGAKHDLRNCWW HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEE IIDYNRQSLDGVVTQGLNARFRDIFVACGWDVLELKYGTLMQDAFARPGGTQLKAWIDGC EEECCCCHHHHHHHCCCCCHHHEEEEECCCEEEEEHHHHHHHHHHCCCCCCEEHHHHCCC DNNLYSALTFKGGAAWRAQMEGDFTGDNEALALLADHSDAELARLMGNLAGHDAALVAQT CCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHH MKAIDHDRPVCFICYTVKGHGLPLAGHKDNHAGIMTSAQIEDLRDTMGIAVGAEWEAFAG HHHHCCCCCEEEEEEEECCCCEECCCCCCCCCCEEEHHHHHHHHHHHCEEECCCCCCCCC IDIPEAEVRDFLDTVPFNAEGQRRLNANPVPTYDRVDPRIKGVTSTQEAFGKILAAIASD CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC APDLAERIVTTSPDVSVSTNLGPWINKTGLFAKTDQADVFRDQSVPSVQKWRRHGGGRHM CHHHHHHHHCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHCCCCCHHHHHHHCCCCCEE ELGIAENNLFTFLGALGLSHSLFGQRLLPVGTVYDPFICRGLDALNYACYQDARFMLAAT EEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHCCEEEEEEC PSGVSLSHEGGAHQSISTPLIGMAQDGLASFEPAFADELATIMRWGFDYMQRDGSGDPSE CCCCEECCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHCHHHHHCCCCCCCCC DNWLRDETGGSVYLRLSTVPLEQIDRTTDAAFETGVLDGGYWLRRPEPGTRVAIAYTGVV CCCCCCCCCCEEEEEEECCCHHHHHCHHHHHHHCCCCCCCEEEECCCCCCEEEEEEECCC APEAIRAAGLLSETMRGIGVLAITSADRLNAGWQAAERARQRGQTGVRSTIETLLADLPS CHHHHHHHHHHHHHHHCCEEEEEECCHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC DAGLVTVADAHPVTLSWLGGVEGHRVKSLGVEHFGQAGTVDDIYRLHGIDANAIQHAAMA CCCEEEEECCCCEEEEECCCCCCCHHHHHCHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH LMGGQSARYAQPLPG HHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021225 [H]