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The map label for this gene is ycjO [C]

Identifier: 89056045

GI number: 89056045

Start: 3617777

End: 3618712

Strand: Direct

Name: ycjO [C]

Synonym: Jann_3554

Alternate gene names: 89056045

Gene position: 3617777-3618712 (Clockwise)

Preceding gene: 89056044

Following gene: 89056046

Centisome position: 83.78

GC content: 58.76

Gene sequence:

>936_bases
GTGACCGCGCATCCTCAAACCAACGTCATGCCCGGGGGATCCCGGGCACGACGCTCGCTTTATTGGCGATACATGGTGGA
GCCGTTCCTTTACCTGTCGCCCGCCATCGTCCTGATCGGCACGGTCATGCTGATCCCGCTGGTCATCGGCATCTCCTATT
CCTTTCAGTCCATCGAGATCCTGAACCCCTTCGCCACTGGCTGGGTGGGGTTTGAGAATTACGTTGATCTCTGGTCTGAT
CGCCGCTTCTGGATCGCGCTGGAAAATACCTTCTGGTGGACGTTTTGGTCCGTCTCATTCCAATTTCTTCTGGGCCTTGG
CCTCGCGCTGCTGCTCAACACCCACTTCTTCGGAAAGCGCTTGTTTCAGGCGCTGGTCTTCCTGCCTTGGGCGGTGCCCA
CATTCCTGTCGGCGCTGACCTGGTCATGGCTGTTCAACCCGACCATCGGCCCCCTGCCCCATTGGATGGCAGCCCTTGGC
ATCTTGGAAGAACCCTACAACATCATGGGCGACCCGGATCTGGCGCTTTGGGGACCGATCGTGGCCAACATCTGGTTCGG
CGTGCCGTTCTTTGCGATCACGCTGCTCGCCGCTCTGCAATCCATCCCGGAGGAGCTGTTTGAGGCCGCCGAGATCGACG
GCGCATCCCCCTGGCAGACCTTCACGAAAATCACCCTGCCCTTCCTCGCACCCATGATCGCCATCACCGTCATGCTGCGC
ACGATCTGGATCGCTAATTTCGCCGATCTGATCTTCGTGATGACGGGCGGTGGACCCGCAAATTCGACCCAGATCCTCTC
GACATACATCTTCACCACCGCCTTCCGACGCCTTGATTTCGGGTTCGCATCGACCATCGCGGTGGCTCTCCTGATCATCC
TTCTGGCCTATGCGATCTTGGTGCTGTGGCTGCGCAAGAAACTGGTGAAGGTGTAA

Upstream 100 bases:

>100_bases
CCAGCCAGGAAGCGCTTCTGGGACAGATCACCGCGCAGGAATTGGCCGACCAATGGGCCGAGTACCTGAACGAGGCGCAA
GCCAACTGGCAGGCCGCCCA

Downstream 100 bases:

>100_bases
ACGGCCATGTCTGTCACCCGCCCAAACCCCGCTTTGACCATCGGCAAATACGCGGCCCTGCTGGCGTACCTGCTGTTCGC
GCTGTTCCCGCTTTACTGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTAHPQTNVMPGGSRARRSLYWRYMVEPFLYLSPAIVLIGTVMLIPLVIGISYSFQSIEILNPFATGWVGFENYVDLWSD
RRFWIALENTFWWTFWSVSFQFLLGLGLALLLNTHFFGKRLFQALVFLPWAVPTFLSALTWSWLFNPTIGPLPHWMAALG
ILEEPYNIMGDPDLALWGPIVANIWFGVPFFAITLLAALQSIPEELFEAAEIDGASPWQTFTKITLPFLAPMIAITVMLR
TIWIANFADLIFVMTGGGPANSTQILSTYIFTTAFRRLDFGFASTIAVALLIILLAYAILVLWLRKKLVKV

Sequences:

>Translated_311_residues
MTAHPQTNVMPGGSRARRSLYWRYMVEPFLYLSPAIVLIGTVMLIPLVIGISYSFQSIEILNPFATGWVGFENYVDLWSD
RRFWIALENTFWWTFWSVSFQFLLGLGLALLLNTHFFGKRLFQALVFLPWAVPTFLSALTWSWLFNPTIGPLPHWMAALG
ILEEPYNIMGDPDLALWGPIVANIWFGVPFFAITLLAALQSIPEELFEAAEIDGASPWQTFTKITLPFLAPMIAITVMLR
TIWIANFADLIFVMTGGGPANSTQILSTYIFTTAFRRLDFGFASTIAVALLIILLAYAILVLWLRKKLVKV
>Mature_310_residues
TAHPQTNVMPGGSRARRSLYWRYMVEPFLYLSPAIVLIGTVMLIPLVIGISYSFQSIEILNPFATGWVGFENYVDLWSDR
RFWIALENTFWWTFWSVSFQFLLGLGLALLLNTHFFGKRLFQALVFLPWAVPTFLSALTWSWLFNPTIGPLPHWMAALGI
LEEPYNIMGDPDLALWGPIVANIWFGVPFFAITLLAALQSIPEELFEAAEIDGASPWQTFTKITLPFLAPMIAITVMLRT
IWIANFADLIFVMTGGGPANSTQILSTYIFTTAFRRLDFGFASTIAVALLIILLAYAILVLWLRKKLVKV

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=265, Percent_Identity=33.9622641509434, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790465, Length=336, Percent_Identity=30.0595238095238, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789861, Length=291, Percent_Identity=31.2714776632302, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788764, Length=217, Percent_Identity=30.8755760368664, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35184; Mature: 35053

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHPQTNVMPGGSRARRSLYWRYMVEPFLYLSPAIVLIGTVMLIPLVIGISYSFQSIEI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
LNPFATGWVGFENYVDLWSDRRFWIALENTFWWTFWSVSFQFLLGLGLALLLNTHFFGKR
HCHHHHHHCCHHHHHHHHCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQALVFLPWAVPTFLSALTWSWLFNPTIGPLPHWMAALGILEEPYNIMGDPDLALWGPI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHCCCCCHHHHHHH
VANIWFGVPFFAITLLAALQSIPEELFEAAEIDGASPWQTFTKITLPFLAPMIAITVMLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TIWIANFADLIFVMTGGGPANSTQILSTYIFTTAFRRLDFGFASTIAVALLIILLAYAIL
HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLWLRKKLVKV
HHHHHHHHHCC
>Mature Secondary Structure 
TAHPQTNVMPGGSRARRSLYWRYMVEPFLYLSPAIVLIGTVMLIPLVIGISYSFQSIEI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
LNPFATGWVGFENYVDLWSDRRFWIALENTFWWTFWSVSFQFLLGLGLALLLNTHFFGKR
HCHHHHHHCCHHHHHHHHCCCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFQALVFLPWAVPTFLSALTWSWLFNPTIGPLPHWMAALGILEEPYNIMGDPDLALWGPI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHCCCCCHHHHHHH
VANIWFGVPFFAITLLAALQSIPEELFEAAEIDGASPWQTFTKITLPFLAPMIAITVMLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TIWIANFADLIFVMTGGGPANSTQILSTYIFTTAFRRLDFGFASTIAVALLIILLAYAIL
HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLWLRKKLVKV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA