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The map label for this gene is yybE [H]

Identifier: 89055895

GI number: 89055895

Start: 3455426

End: 3456346

Strand: Direct

Name: yybE [H]

Synonym: Jann_3404

Alternate gene names: 89055895

Gene position: 3455426-3456346 (Clockwise)

Preceding gene: 89055893

Following gene: 89055896

Centisome position: 80.02

GC content: 65.15

Gene sequence:

>921_bases
ATGGCCCTGTCCCTCAAGGCGATGACCTATTTCACAACCGCCCTGCGCCACGGCAACATCGCCCGGGCCGCCGCAGAGCT
GAACATCGCAGCCTCCGCCGTCTCAACCGCCATTGATCAAGTGGAGGCGGAATTCGACCTCACGCTGATCACGCGCCACC
GCGCCCGGGGCATTCAGGCCAATGCCAACGGCAGGATCGTCGCCGGCAAATGTGAGCGGTTGCTGGAGGAGTATCGCGCG
CTCCTGTCCGAGGGGGCGGACCTGAAACAAGCGCTCGGCGGGCCGCTGCGGATCGGCTATTACGCGCCGATCGCGCCTGC
CTTTCTGCCCGCCGTTCTGGCGTCCTTTGTGCCCGACGCCAGCCTTGTCGAGTTGACACTGGAGGATTGCGACAACGACA
CGGCGCAGGACGGGCTGCTGTCGGGCAAATACGACGCGATCCTGTTTGTATCCGAAGACGTGCGCCCCGCCATCACCTAT
GACATCTTGATCAAGGCCCCGCCCTATTGTCTGGTGCCCGCCGATCACGCGCTGGCCTCTGCCCCCGCCGTCACCATGGC
GCAGATCGCGCAAGAACCGCTGGTCGTGCTGAACCGGCCCGTCGCGGCGGAGTATTACCGACGGCTTTTTGACGGCCAGG
GTGACGGTCCCTCAATTGCTGCCTACGCCACGTCGACGGAGATGGTGCGCAGCCTTGTCGGCGCGGGCCATGGATGCGCG
GTCCTGAACATGCGCCCGCAAACGTCGGTCAGCTATGCGGGGGAAAGCGTGGTCGCACGGCCGATCTCGGACCCATTGCC
GCCGCTCACCCTATCCATCGGCTACGACATGACCCGTCCGCGCCGATTGGTGCAGCGCTTCGTGGCAGCGTGCCACGCCC
ATTTCGCAAGGGACGGGCAGGATCAATGCATCGTCCGGTGA

Upstream 100 bases:

>100_bases
GGGACCTCACTGCAATCGGGTGAACTACCCTGCCACGGCTCGCCTCTTCCAAAAAACAGTATATAGAGGCAAACTACATC
TGATAATCCGAGGTTTAGCG

Downstream 100 bases:

>100_bases
CAGATGGGACAGGTAAGGGGGGATGGTACCAGCGCCCCGGCTCGAACGGGGGACCTCCTGATCCACAATCAGGCGCTCTA
ACCTACTGAGCTACGCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MALSLKAMTYFTTALRHGNIARAAAELNIAASAVSTAIDQVEAEFDLTLITRHRARGIQANANGRIVAGKCERLLEEYRA
LLSEGADLKQALGGPLRIGYYAPIAPAFLPAVLASFVPDASLVELTLEDCDNDTAQDGLLSGKYDAILFVSEDVRPAITY
DILIKAPPYCLVPADHALASAPAVTMAQIAQEPLVVLNRPVAAEYYRRLFDGQGDGPSIAAYATSTEMVRSLVGAGHGCA
VLNMRPQTSVSYAGESVVARPISDPLPPLTLSIGYDMTRPRRLVQRFVAACHAHFARDGQDQCIVR

Sequences:

>Translated_306_residues
MALSLKAMTYFTTALRHGNIARAAAELNIAASAVSTAIDQVEAEFDLTLITRHRARGIQANANGRIVAGKCERLLEEYRA
LLSEGADLKQALGGPLRIGYYAPIAPAFLPAVLASFVPDASLVELTLEDCDNDTAQDGLLSGKYDAILFVSEDVRPAITY
DILIKAPPYCLVPADHALASAPAVTMAQIAQEPLVVLNRPVAAEYYRRLFDGQGDGPSIAAYATSTEMVRSLVGAGHGCA
VLNMRPQTSVSYAGESVVARPISDPLPPLTLSIGYDMTRPRRLVQRFVAACHAHFARDGQDQCIVR
>Mature_305_residues
ALSLKAMTYFTTALRHGNIARAAAELNIAASAVSTAIDQVEAEFDLTLITRHRARGIQANANGRIVAGKCERLLEEYRAL
LSEGADLKQALGGPLRIGYYAPIAPAFLPAVLASFVPDASLVELTLEDCDNDTAQDGLLSGKYDAILFVSEDVRPAITYD
ILIKAPPYCLVPADHALASAPAVTMAQIAQEPLVVLNRPVAAEYYRRLFDGQGDGPSIAAYATSTEMVRSLVGAGHGCAV
LNMRPQTSVSYAGESVVARPISDPLPPLTLSIGYDMTRPRRLVQRFVAACHAHFARDGQDQCIVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=26.6129032258064, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=24.0418118466899, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=307, Percent_Identity=24.7557003257329, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32795; Mature: 32664

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSLKAMTYFTTALRHGNIARAAAELNIAASAVSTAIDQVEAEFDLTLITRHRARGIQA
CCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCEEE
NANGRIVAGKCERLLEEYRALLSEGADLKQALGGPLRIGYYAPIAPAFLPAVLASFVPDA
CCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECEECCHHHHHHHHHHHHHCCCC
SLVELTLEDCDNDTAQDGLLSGKYDAILFVSEDVRPAITYDILIKAPPYCLVPADHALAS
HHEEEEHHHCCCCCHHCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCEEECCCHHHHHC
APAVTMAQIAQEPLVVLNRPVAAEYYRRLFDGQGDGPSIAAYATSTEMVRSLVGAGHGCA
CCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHCCCCCEE
VLNMRPQTSVSYAGESVVARPISDPLPPLTLSIGYDMTRPRRLVQRFVAACHAHFARDGQ
EEECCCCCCHHHCCCHHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
DQCIVR
CCCCCC
>Mature Secondary Structure 
ALSLKAMTYFTTALRHGNIARAAAELNIAASAVSTAIDQVEAEFDLTLITRHRARGIQA
CEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCEEE
NANGRIVAGKCERLLEEYRALLSEGADLKQALGGPLRIGYYAPIAPAFLPAVLASFVPDA
CCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECEECCHHHHHHHHHHHHHCCCC
SLVELTLEDCDNDTAQDGLLSGKYDAILFVSEDVRPAITYDILIKAPPYCLVPADHALAS
HHEEEEHHHCCCCCHHCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCEEECCCHHHHHC
APAVTMAQIAQEPLVVLNRPVAAEYYRRLFDGQGDGPSIAAYATSTEMVRSLVGAGHGCA
CCHHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHCCCCCEE
VLNMRPQTSVSYAGESVVARPISDPLPPLTLSIGYDMTRPRRLVQRFVAACHAHFARDGQ
EEECCCCCCHHHCCCHHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
DQCIVR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]