| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89055758
Identifier: 89055758
GI number: 89055758
Start: 3321623
End: 3322774
Strand: Direct
Name: 89055758
Synonym: Jann_3267
Alternate gene names: NA
Gene position: 3321623-3322774 (Clockwise)
Preceding gene: 89055757
Following gene: 89055759
Centisome position: 76.93
GC content: 63.54
Gene sequence:
>1152_bases ATGACCCACGACACCGGCGACGATCAGGCCCCCCCATGCCTCGACTACGACCCGGATGCGCCGATCAACTGGACGCCCAC TTGGCACCGCAACGTGACAGCCTACCCCTGGGCGCAGAACGAACCCCGGGGCTACCGCCGCGCCGCTGGCATGTTCGGTG CGGATGGCCAGCACCTGACTGACAGCCATTGTTGGCGTTATGCCCATGAGCCGATGACCATCGTGCCAGAGCGTGATGAC ATCAATGCGCCCAATGATCTGGTCGAAGGCCGTTGGCTCTTTGCCGGCATGTTCTACGCCCATTTCGGGCACTTCCTGGT GGAGACGACGCAGCGCCTCTACGCTCTCGCAGATCATGCCGATGTGGATGGGATCTTCTTTTACCCCAAGCCGCGCCTGA CCCATGAATTCAAACCCTACCGCGCCCTCAAACCGATCTTCGCGCATCTGGGCCTGGCCGATGTGAAGGTGCGTCTTCCT CAAAAGCCCGTGCGGATCGAACAGATCGCCTTTCCTCCCCCCGCCTTCGGGATCGGAGAGATGTCCGCAGGCCGCCCCGA ATACCGCGCCTTCATGCGCGACCGGCTGACGCGCGACACGCCGCCCGAGGGCGCCCGCGATATTTACATCACCCGCTCGG GCCTGACATCGCGGCGGGGGCGCATCGTGATGGAGGAGCATATGGAGGCGCTGATGGCCGCCGAAGGCTATCGCATCTTC CACCCCCAGGGTCACAGTCTGGCGGAGCAGGTCGCTCAATACCGGGCCGCCCGGCGGATCGTGGCGCTGGATGGCTCGGC CCTGCATCTCACCGCTATGGTGGCAGAGCCGGAAACGAAAATCGCGATCATCAACCGCGGCCCCTCGGCCAATGTCGAAG ATTACATGCGTCAGTTCCGCAGCTTCGCGGGCATCGAGCCCACGCGGATCGAGGCAATCAAAGGTTGCTGGCATCCGGCG GATCGGCGCTTTGTCAAACGTGAAGTGCAGGCGCATCTGGACTTTCCCAGCGCCGCGCACCAACTGGCCGAGGCGGGTTT CGTTGCGAAACCGCAGCTCTGGACCGACCCTCCGCGGGCCGATCTGGAGGCGCGGTTGACCGCACTCTCAGCATCTTTTG AAGCAGAGCTAAGCTACAGGGATCTGCGCTGA
Upstream 100 bases:
>100_bases ATGGCACCAAACCCTGGTGGCGCAAAAACCCACCGCTGGAAAATTCCTATGCCTGGCGCATGTGCCAGGAGGTCGGCATC ACGCCGGAGGACGCGTTGGA
Downstream 100 bases:
>100_bases TGTTGGAAGACCAGCCTGCCCTTATCGTGACCGCGATGAAGAACGAGGGGCCATATATCATTGATTGGATCGCCCATAAT ATGGCGGTGGGGTTCGACAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MTHDTGDDQAPPCLDYDPDAPINWTPTWHRNVTAYPWAQNEPRGYRRAAGMFGADGQHLTDSHCWRYAHEPMTIVPERDD INAPNDLVEGRWLFAGMFYAHFGHFLVETTQRLYALADHADVDGIFFYPKPRLTHEFKPYRALKPIFAHLGLADVKVRLP QKPVRIEQIAFPPPAFGIGEMSAGRPEYRAFMRDRLTRDTPPEGARDIYITRSGLTSRRGRIVMEEHMEALMAAEGYRIF HPQGHSLAEQVAQYRAARRIVALDGSALHLTAMVAEPETKIAIINRGPSANVEDYMRQFRSFAGIEPTRIEAIKGCWHPA DRRFVKREVQAHLDFPSAAHQLAEAGFVAKPQLWTDPPRADLEARLTALSASFEAELSYRDLR
Sequences:
>Translated_383_residues MTHDTGDDQAPPCLDYDPDAPINWTPTWHRNVTAYPWAQNEPRGYRRAAGMFGADGQHLTDSHCWRYAHEPMTIVPERDD INAPNDLVEGRWLFAGMFYAHFGHFLVETTQRLYALADHADVDGIFFYPKPRLTHEFKPYRALKPIFAHLGLADVKVRLP QKPVRIEQIAFPPPAFGIGEMSAGRPEYRAFMRDRLTRDTPPEGARDIYITRSGLTSRRGRIVMEEHMEALMAAEGYRIF HPQGHSLAEQVAQYRAARRIVALDGSALHLTAMVAEPETKIAIINRGPSANVEDYMRQFRSFAGIEPTRIEAIKGCWHPA DRRFVKREVQAHLDFPSAAHQLAEAGFVAKPQLWTDPPRADLEARLTALSASFEAELSYRDLR >Mature_382_residues THDTGDDQAPPCLDYDPDAPINWTPTWHRNVTAYPWAQNEPRGYRRAAGMFGADGQHLTDSHCWRYAHEPMTIVPERDDI NAPNDLVEGRWLFAGMFYAHFGHFLVETTQRLYALADHADVDGIFFYPKPRLTHEFKPYRALKPIFAHLGLADVKVRLPQ KPVRIEQIAFPPPAFGIGEMSAGRPEYRAFMRDRLTRDTPPEGARDIYITRSGLTSRRGRIVMEEHMEALMAAEGYRIFH PQGHSLAEQVAQYRAARRIVALDGSALHLTAMVAEPETKIAIINRGPSANVEDYMRQFRSFAGIEPTRIEAIKGCWHPAD RRFVKREVQAHLDFPSAAHQLAEAGFVAKPQLWTDPPRADLEARLTALSASFEAELSYRDLR
Specific function: Unknown
COG id: COG4421
COG function: function code G; Capsular polysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43552; Mature: 43421
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHDTGDDQAPPCLDYDPDAPINWTPTWHRNVTAYPWAQNEPRGYRRAAGMFGADGQHLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCC DSHCWRYAHEPMTIVPERDDINAPNDLVEGRWLFAGMFYAHFGHFLVETTQRLYALADHA HHHHHHHHCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVDGIFFYPKPRLTHEFKPYRALKPIFAHLGLADVKVRLPQKPVRIEQIAFPPPAFGIGE CCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCC MSAGRPEYRAFMRDRLTRDTPPEGARDIYITRSGLTSRRGRIVMEEHMEALMAAEGYRIF CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEE HPQGHSLAEQVAQYRAARRIVALDGSALHLTAMVAEPETKIAIINRGPSANVEDYMRQFR CCCCHHHHHHHHHHHHHCEEEEECCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHH SFAGIEPTRIEAIKGCWHPADRRFVKREVQAHLDFPSAAHQLAEAGFVAKPQLWTDPPRA HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC DLEARLTALSASFEAELSYRDLR CHHHHHHHHHCCHHCCCCCCCCC >Mature Secondary Structure THDTGDDQAPPCLDYDPDAPINWTPTWHRNVTAYPWAQNEPRGYRRAAGMFGADGQHLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCCCCC DSHCWRYAHEPMTIVPERDDINAPNDLVEGRWLFAGMFYAHFGHFLVETTQRLYALADHA HHHHHHHHCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVDGIFFYPKPRLTHEFKPYRALKPIFAHLGLADVKVRLPQKPVRIEQIAFPPPAFGIGE CCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCC MSAGRPEYRAFMRDRLTRDTPPEGARDIYITRSGLTSRRGRIVMEEHMEALMAAEGYRIF CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEE HPQGHSLAEQVAQYRAARRIVALDGSALHLTAMVAEPETKIAIINRGPSANVEDYMRQFR CCCCHHHHHHHHHHHHHCEEEEECCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHH SFAGIEPTRIEAIKGCWHPADRRFVKREVQAHLDFPSAAHQLAEAGFVAKPQLWTDPPRA HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC DLEARLTALSASFEAELSYRDLR CHHHHHHHHHCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA