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The map label for this gene is xylB [H]

Identifier: 89055750

GI number: 89055750

Start: 3310316

End: 3311917

Strand: Direct

Name: xylB [H]

Synonym: Jann_3259

Alternate gene names: 89055750

Gene position: 3310316-3311917 (Clockwise)

Preceding gene: 89055745

Following gene: 89055753

Centisome position: 76.66

GC content: 67.73

Gene sequence:

>1602_bases
ATGGCCGAATTGATCGGTCCAATGATTGCGACACGCTCCCCCCAAAGACGATGGCCTCCGCACGCACCGCACACGATCAG
CCGATGGACGGAATTGACACCAACGGTCGGGCCGGGTTTAACCCGGTCGCGGGATCTGGAGGGGACGCGCGTGGCACATC
TTGGCATTGATTTGGGCACATCTGCCGTCAAAGTCTGCGTCACCGACGCGGACGGCCAGGTCCTGGCGACCACGGACGGG
CCGCTGACGTCTCAACATCCGTTTCCCGGTGCCAGCGAACAATCACCGGACGCCTGGATCGACGCGCTGTGCGTGGCGAT
GGCCGCACTTCCCGAGACGGTCCGTGGTCAGGTGTCGGTCATCGGCCTGTCGGGTCAGATGCATGGCGCGGTGGTTCTGG
GGCCGGACCATGTGCCCCTTCGCCCAGCTATTTTGTGGAACGATGGGCGCGCCGTCGCGGAATGTGCGGCGATGGAGGCG
GCGGTGCCACGGATCGGGCAGATCACGGGCGTGCCGCCTATGCCCGGCTTCACCGCACCCAAATTGCTGTGGCTCAGCCG
CCATGAACCTGCGCTTCACGCCAAGGTCGCCCATGTGCTGCTGCCAAAGGATTACCTTGGCCTGTACCTGCATGGGGGGC
TCGCCACTGACCCGTCCGATGCAGCGGGCACGTCCTGGTTTGATCAGCACACGCGGACCTGGTCCCGGGACTTATGCGAC
GCCTCGGCCACCGATATCGCTTGGCTGCCCGAGGTCCTGTCTGGCGAGGCGATTGCCGGGCACCTGACCGCGCAGGCCGC
TGAAAGGCTTGACCTGCCCCCCGGTATTCCCGTCGCCACCGGCGCGGGTGATGGGGCTGCGGGGGCCGTTGGGATCGGGG
CGATTGCGCCGGGCGATGGCTTCATATCGCTTGGCACCTCCGGCCAGTTGTTTGTAACGACCGCGGCTTGCCTACCGAAC
CCCGAGAGCCGCATTCACGCCTACGCCCATACGCTGCCGGACCTGTGGTTCCAGATGGCCGCGATGCTGAACGGGGCGCG
GCCCATGGCCTGGCTCGCCGCGCTGCTGGATCGCCCTATCGCGGACCTGCTGCGCGAGGCTGAAATCGCCGCTCCGGGCC
CGCTCTTCCTGCCCTACCTCAGCGGTGAGCGGACCCCCCATGGCGACAACGACATCCGCGCGGGGTTCTGGGGTCTGACC
GAGACGACAACCCAAGGCGCCTGCATGCGCGCGGTGATGGAGGCGGTGGCGTTTACCTTCGCCGATGCACAGGCCGCGAT
GGCGGCGGGTGGCACGCGCCCTGAGCGGCTGTTGGCCATTGGCGGCGGCACCCGCAGTGACGCGCTGTTGCAGATGATCG
CCGACGTGATGCAGGTGCCGCTAGGCCGCAGCGACGCGGCGGAGGTGGGCCCGGCCCTGGGGGCCGCGCGGCTGGGGCAG
ATCGCACTTGGCGGTGACCCGGCGGAGGTCGCGACCAAGCCCGAGGTCCAGCGTTGGTTCACGCCAGACCCCACCCAGTC
CGAGGCCATCGCCCCACGCCTTGCTGGCTACAGGACGCTCTACCCGGCACTGAAGTCAGTCGGTGAGGCGATGGGTCGTT
AG

Upstream 100 bases:

>100_bases
TTCCAGAGCCGCCGCCGGGTCCTCGCCTGAATGCTCTGCCGGCTTTCCGGTCCTGGCGTGGATGCCACCGTGATACTCAC
CGCACATCTGCTGGTGCGTC

Downstream 100 bases:

>100_bases
ATCACACCGCTTAAATCACACCGCGCTGGATCTGATCTTCTTCAATGCTCTCAAACAGCGCCTTGAAGTTGCCCTCACCG
AAGCCGTCGTCGCCCTTGCG

Product: xylulokinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MAELIGPMIATRSPQRRWPPHAPHTISRWTELTPTVGPGLTRSRDLEGTRVAHLGIDLGTSAVKVCVTDADGQVLATTDG
PLTSQHPFPGASEQSPDAWIDALCVAMAALPETVRGQVSVIGLSGQMHGAVVLGPDHVPLRPAILWNDGRAVAECAAMEA
AVPRIGQITGVPPMPGFTAPKLLWLSRHEPALHAKVAHVLLPKDYLGLYLHGGLATDPSDAAGTSWFDQHTRTWSRDLCD
ASATDIAWLPEVLSGEAIAGHLTAQAAERLDLPPGIPVATGAGDGAAGAVGIGAIAPGDGFISLGTSGQLFVTTAACLPN
PESRIHAYAHTLPDLWFQMAAMLNGARPMAWLAALLDRPIADLLREAEIAAPGPLFLPYLSGERTPHGDNDIRAGFWGLT
ETTTQGACMRAVMEAVAFTFADAQAAMAAGGTRPERLLAIGGGTRSDALLQMIADVMQVPLGRSDAAEVGPALGAARLGQ
IALGGDPAEVATKPEVQRWFTPDPTQSEAIAPRLAGYRTLYPALKSVGEAMGR

Sequences:

>Translated_533_residues
MAELIGPMIATRSPQRRWPPHAPHTISRWTELTPTVGPGLTRSRDLEGTRVAHLGIDLGTSAVKVCVTDADGQVLATTDG
PLTSQHPFPGASEQSPDAWIDALCVAMAALPETVRGQVSVIGLSGQMHGAVVLGPDHVPLRPAILWNDGRAVAECAAMEA
AVPRIGQITGVPPMPGFTAPKLLWLSRHEPALHAKVAHVLLPKDYLGLYLHGGLATDPSDAAGTSWFDQHTRTWSRDLCD
ASATDIAWLPEVLSGEAIAGHLTAQAAERLDLPPGIPVATGAGDGAAGAVGIGAIAPGDGFISLGTSGQLFVTTAACLPN
PESRIHAYAHTLPDLWFQMAAMLNGARPMAWLAALLDRPIADLLREAEIAAPGPLFLPYLSGERTPHGDNDIRAGFWGLT
ETTTQGACMRAVMEAVAFTFADAQAAMAAGGTRPERLLAIGGGTRSDALLQMIADVMQVPLGRSDAAEVGPALGAARLGQ
IALGGDPAEVATKPEVQRWFTPDPTQSEAIAPRLAGYRTLYPALKSVGEAMGR
>Mature_532_residues
AELIGPMIATRSPQRRWPPHAPHTISRWTELTPTVGPGLTRSRDLEGTRVAHLGIDLGTSAVKVCVTDADGQVLATTDGP
LTSQHPFPGASEQSPDAWIDALCVAMAALPETVRGQVSVIGLSGQMHGAVVLGPDHVPLRPAILWNDGRAVAECAAMEAA
VPRIGQITGVPPMPGFTAPKLLWLSRHEPALHAKVAHVLLPKDYLGLYLHGGLATDPSDAAGTSWFDQHTRTWSRDLCDA
SATDIAWLPEVLSGEAIAGHLTAQAAERLDLPPGIPVATGAGDGAAGAVGIGAIAPGDGFISLGTSGQLFVTTAACLPNP
ESRIHAYAHTLPDLWFQMAAMLNGARPMAWLAALLDRPIADLLREAEIAAPGPLFLPYLSGERTPHGDNDIRAGFWGLTE
TTTQGACMRAVMEAVAFTFADAQAAMAAGGTRPERLLAIGGGTRSDALLQMIADVMQVPLGRSDAAEVGPALGAARLGQI
ALGGDPAEVATKPEVQRWFTPDPTQSEAIAPRLAGYRTLYPALKSVGEAMGR

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Homo sapiens, GI4504007, Length=443, Percent_Identity=25.2821670428894, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI189409120, Length=443, Percent_Identity=25.2821670428894, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI42794763, Length=443, Percent_Identity=24.6049661399549, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI41393575, Length=434, Percent_Identity=24.6543778801843, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI18860918, Length=478, Percent_Identity=23.4309623430962, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI164663828, Length=499, Percent_Identity=25.6513026052104, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI164663830, Length=522, Percent_Identity=23.9463601532567, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI74315356, Length=349, Percent_Identity=25.7879656160458, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1789987, Length=479, Percent_Identity=41.7536534446764, Blast_Score=321, Evalue=6e-89,
Organism=Escherichia coli, GI1790005, Length=493, Percent_Identity=26.1663286004057, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787789, Length=529, Percent_Identity=23.6294896030246, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790361, Length=514, Percent_Identity=24.3190661478599, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1789168, Length=479, Percent_Identity=25.0521920668058, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789138, Length=457, Percent_Identity=24.2888402625821, Blast_Score=83, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17535599, Length=438, Percent_Identity=26.9406392694064, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17864214, Length=462, Percent_Identity=25.1082251082251, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24654573, Length=410, Percent_Identity=25.8536585365854, Blast_Score=88, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24656367, Length=505, Percent_Identity=23.960396039604, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21357867, Length=521, Percent_Identity=23.6084452975048, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24656372, Length=379, Percent_Identity=25.3298153034301, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24657106, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24657102, Length=258, Percent_Identity=26.7441860465116, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 55682; Mature: 55551

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00933 FGGY_KINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELIGPMIATRSPQRRWPPHAPHTISRWTELTPTVGPGLTRSRDLEGTRVAHLGIDLGT
CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCC
SAVKVCVTDADGQVLATTDGPLTSQHPFPGASEQSPDAWIDALCVAMAALPETVRGQVSV
CEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEE
IGLSGQMHGAVVLGPDHVPLRPAILWNDGRAVAECAAMEAAVPRIGQITGVPPMPGFTAP
EEECCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KLLWLSRHEPALHAKVAHVLLPKDYLGLYLHGGLATDPSDAAGTSWFDQHTRTWSRDLCD
CEEEECCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ASATDIAWLPEVLSGEAIAGHLTAQAAERLDLPPGIPVATGAGDGAAGAVGIGAIAPGDG
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEECEECCCCC
FISLGTSGQLFVTTAACLPNPESRIHAYAHTLPDLWFQMAAMLNGARPMAWLAALLDRPI
EEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ADLLREAEIAAPGPLFLPYLSGERTPHGDNDIRAGFWGLTETTTQGACMRAVMEAVAFTF
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ADAQAAMAAGGTRPERLLAIGGGTRSDALLQMIADVMQVPLGRSDAAEVGPALGAARLGQ
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
IALGGDPAEVATKPEVQRWFTPDPTQSEAIAPRLAGYRTLYPALKSVGEAMGR
EEECCCCHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AELIGPMIATRSPQRRWPPHAPHTISRWTELTPTVGPGLTRSRDLEGTRVAHLGIDLGT
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCC
SAVKVCVTDADGQVLATTDGPLTSQHPFPGASEQSPDAWIDALCVAMAALPETVRGQVSV
CEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEE
IGLSGQMHGAVVLGPDHVPLRPAILWNDGRAVAECAAMEAAVPRIGQITGVPPMPGFTAP
EEECCCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
KLLWLSRHEPALHAKVAHVLLPKDYLGLYLHGGLATDPSDAAGTSWFDQHTRTWSRDLCD
CEEEECCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
ASATDIAWLPEVLSGEAIAGHLTAQAAERLDLPPGIPVATGAGDGAAGAVGIGAIAPGDG
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEECEECCCCC
FISLGTSGQLFVTTAACLPNPESRIHAYAHTLPDLWFQMAAMLNGARPMAWLAALLDRPI
EEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ADLLREAEIAAPGPLFLPYLSGERTPHGDNDIRAGFWGLTETTTQGACMRAVMEAVAFTF
HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ADAQAAMAAGGTRPERLLAIGGGTRSDALLQMIADVMQVPLGRSDAAEVGPALGAARLGQ
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
IALGGDPAEVATKPEVQRWFTPDPTQSEAIAPRLAGYRTLYPALKSVGEAMGR
EEECCCCHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6320721; 8041620; 9278503 [H]