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The map label for this gene is 89055687

Identifier: 89055687

GI number: 89055687

Start: 3236930

End: 3237496

Strand: Direct

Name: 89055687

Synonym: Jann_3196

Alternate gene names: NA

Gene position: 3236930-3237496 (Clockwise)

Preceding gene: 89055686

Following gene: 89055688

Centisome position: 74.96

GC content: 60.67

Gene sequence:

>567_bases
GTGATCTTGCGAGCCCTCCTTCTGGCTTGTGCGGGGGTCCTCTCCGCGCAGGCCGCCTCAGCCCAGACCCTGACCGAAGA
CCTGGGTGGGGCCTTCGCGCTGACCGATCACACCGGAGCGATCCGCACGGAAGTGGACCCCAACGGCCAGCCGCAATTGC
TGTTTTTCGGGTATGCCAATTGTCAGGAAATCTGCTCTGCCGTGTTCCCGACAATGGCGTCCATCGTGGACATCATGGAC
GCCGATGGCATTGCGATACGGCCCGTCCTGATCACTGTCGACCCGGAGCGTGACACGGTAGACACCATGGCCGATGCCCT
GCATATCCATCACCCGGATTTCATCGGGCTGACCGGGTCGGAGGCTGACCTGCAAGTGGCCTACGATGCCTATTCCGTCG
AGTTCGAAGAGCTTTTCGTCGACCCGTTCTACGGTACGGTATTCTCCCACGGATCGTTCATCTACCTGCTGGATGGGGAC
GGTACCGTTCTGACCCTGCTTCCCCCGGTGCTGGGGTCGCAGATGATGGCCGACATCGTCGCAGGCTATCTGGACGAGAC
AAGTTAA

Upstream 100 bases:

>100_bases
GACGCTGGTATCGCAATGACCCGCGCGTCATGGGCCTGATCGAGGCCGACGGCTACCTTGGGACAGGCGAGACCTGGGAA
GACGCGTGGGAGATCACACG

Downstream 100 bases:

>100_bases
CATGAACCGCAGACGTGTTTTGATCGGCGTGGGTGCGCTGGCGCTGGTCGCAGGCACCTTTGCTGCCACCGAGGGCCGCA
ACCTATTCTACGCCGCCCTG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MILRALLLACAGVLSAQAASAQTLTEDLGGAFALTDHTGAIRTEVDPNGQPQLLFFGYANCQEICSAVFPTMASIVDIMD
ADGIAIRPVLITVDPERDTVDTMADALHIHHPDFIGLTGSEADLQVAYDAYSVEFEELFVDPFYGTVFSHGSFIYLLDGD
GTVLTLLPPVLGSQMMADIVAGYLDETS

Sequences:

>Translated_188_residues
MILRALLLACAGVLSAQAASAQTLTEDLGGAFALTDHTGAIRTEVDPNGQPQLLFFGYANCQEICSAVFPTMASIVDIMD
ADGIAIRPVLITVDPERDTVDTMADALHIHHPDFIGLTGSEADLQVAYDAYSVEFEELFVDPFYGTVFSHGSFIYLLDGD
GTVLTLLPPVLGSQMMADIVAGYLDETS
>Mature_188_residues
MILRALLLACAGVLSAQAASAQTLTEDLGGAFALTDHTGAIRTEVDPNGQPQLLFFGYANCQEICSAVFPTMASIVDIMD
ADGIAIRPVLITVDPERDTVDTMADALHIHHPDFIGLTGSEADLQVAYDAYSVEFEELFVDPFYGTVFSHGSFIYLLDGD
GTVLTLLPPVLGSQMMADIVAGYLDETS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=37.3134328358209, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=37.3134328358209, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=37.3134328358209, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=37.3134328358209, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI4759068, Length=139, Percent_Identity=33.0935251798561, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319498, Length=142, Percent_Identity=35.2112676056338, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6319511, Length=179, Percent_Identity=30.1675977653631, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19920710, Length=136, Percent_Identity=32.3529411764706, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 20050; Mature: 20050

Theoretical pI: Translated: 3.69; Mature: 3.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRALLLACAGVLSAQAASAQTLTEDLGGAFALTDHTGAIRTEVDPNGQPQLLFFGYAN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCEEEEEECCC
CQEICSAVFPTMASIVDIMDADGIAIRPVLITVDPERDTVDTMADALHIHHPDFIGLTGS
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCC
EADLQVAYDAYSVEFEELFVDPFYGTVFSHGSFIYLLDGDGTVLTLLPPVLGSQMMADIV
CCCEEEEEEEHEEEHHHHEECCHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHH
AGYLDETS
HHHHCCCC
>Mature Secondary Structure
MILRALLLACAGVLSAQAASAQTLTEDLGGAFALTDHTGAIRTEVDPNGQPQLLFFGYAN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCEEEEEECCC
CQEICSAVFPTMASIVDIMDADGIAIRPVLITVDPERDTVDTMADALHIHHPDFIGLTGS
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCC
EADLQVAYDAYSVEFEELFVDPFYGTVFSHGSFIYLLDGDGTVLTLLPPVLGSQMMADIV
CCCEEEEEEEHEEEHHHHEECCHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHH
AGYLDETS
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]