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The map label for this gene is yiaD [C]

Identifier: 89055525

GI number: 89055525

Start: 3056440

End: 3057903

Strand: Direct

Name: yiaD [C]

Synonym: Jann_3034

Alternate gene names: 89055525

Gene position: 3056440-3057903 (Clockwise)

Preceding gene: 89055524

Following gene: 89055526

Centisome position: 70.78

GC content: 68.99

Gene sequence:

>1464_bases
ATGAGCCGACCGGACCACGATGACGCAGAGGACGCCCCGCGCATCATCATGCCGACACCCGGTGGCAAACGCCCGGAGGT
GGAGCCTGAAGCAGCCCCCGGCCCCGCTGACCCGCCCGCGCCCGACCCTGCGCCGTCGGTCTCGGACATCCTGTCCGGGT
TCCGCTTCGCGGGCGGCGATCTGCCGGTCATGGTGGCGCAGGCAGCACCCCTTCTGAACCTCGCCCATGCGCTCCGCACC
GGGCAGACCCCGCCCGCCATCGGTGACCTGCGCCGCTCCCTCACCGGGGCCGCGCGCACCTATGAAGCCGCGCTTGCCAC
GGCGGGCATCGTTCCCGATCAGGCCCGCGCCGCCCATTACGTCGTCTGTGCCACGCTCGATGATGTGATCCGCAACACCG
ACTGGGGCGCGGAATGGGCCGTTGAAGGGCTGGTGTCCACCTTCCACCATGACGTCCACGGCGGCGACAAGGTCTTTGCC
CTCCTGACCCATTTTCAACGCACGCCGCGCGCGAACCGCGACCTGTTGCTACTGATCTACCTCTGCCTGTCGCTGGGGTT
TGAAGGCCGCGCCCGTGTCTCATCCCGGGGCGCGGCGGAACTGGCGTTGGTGCGCGAAAACCTGTTCCGCACCCTGCGCA
CCGAATTTGACATCGTGGAACGGGATCTGTCTCCGCTCTGGCAGGGCGAAGACGCCGCCCACTCCCCGGTGCGGCGCAGC
GTGGCGTTCTGGTCGATCACCGGGGTGATCCTGCTGGCGCTCATTGGCGTATTCCTCGTCTATACCCTGCTGCTGAACCG
CGCGGCCGAGGCGACGCTGGCGCGCCTCGCCACACTCCCCCCCGGGGCGCCGCCGTCCCTCGCCCTGCCGGACCCGCCCG
CACCTGATCCGGTGGTGGAGCCGCCCGCGCCTGCTGACCCGCCCGTTGTGACGCCCGAAGACCCGCCGCAGGTGCCGCCC
ATCGACACCTTCATCGCCTTCCTCCAGCCTGAGGTCGACGACGGCCTCGTGCGGCTCTACCGCGAAGGGGACGCGGTGCT
GGTGCGGGTTGCCAATGCGGGCGCGTTCGGCTCCGGCTCCGCCGAGATTGAGGATGACTTTATTGATGTCTTCGATCGCA
TCGGGCAGGCGCTGGCGGCGGAAGATTTCGCCGTCACCGTTCTGGGCCATACCGACAATGTCGCCATCCGCACCGCGCCC
TTTCCGAACAATTACTTCCTGTCGCGCGCCCGCGCCAACGCCGTGCGCGACGTGCTTCTGCAATACGTGGATCCGGTGCG
TGTGGACATCGAAGGTCAGGGCCCCGACCGGCCCATCGCCTCCAACATCACGCCCGCCGGGCAAGAGGCCAATCGCCGGA
CCGAGATCCTTGTGCGCGAGCCCGGGGACCGGGTCCCCGACAGCCTGCTGACCCAGGGCGTGCAACCCGCCGAAGAGGCA
GAGCCACAGGAGCAGACGCCATGA

Upstream 100 bases:

>100_bases
CCGATGATCTCTGGCGGACCACGTCCGACGGAGGGGCCATCGCCATCCATCTGGCCACCGATATTCCCGGCCTTGATCTT
GAGCTGTGGGGGATCCGGGG

Downstream 100 bases:

>100_bases
ACCCCCTTGGCATGTGGACCACGATCCGCTCAAACGTCCAGTCCTACGCCTCTGTGCTTGGACCGCGCTTTGCGGCGCTG
ATCTGGGTCGGCGCGATCTG

Product: OmpA/MotB

Products: NA

Alternate protein names: OmpA/MotB Domain-Containing Protein; Type IV / VI Secretion System Protein DotU Family; OmpA Family Protein; Flagellar Motor Protein MotB; OmpA/MotB; Flagellar Motor Protein MotD; Outer Membrane Protein; Chemotaxis Protein MotB; Type VI Secretion System OmpA/MotB Family Protein; Flagellar Motor Protein; Ompa/Motb Domain Protein; OmpA-Family Protein; DotU Family Type IV/VI Secretion System Protein; SciP Protein; Replication/Virulence Associated Protein; Motility; Type IV/VI Secretion System Protein; DotU Family Type IV / VI Secretion System Protein; Outer Membrane Porin Involved In Nitrogen Fixation; Type VI Secretion System Protein ImpK; Motility Protein B; Outer Membrane Protein Ompa/Motb Family; Flagellar MotB Protein; Type VI Secretion System Core Protein; OmpA-Type Porin; OmpA-Like Porin; OmpA/MotB Family Outer Membrane Protein; Flagellar Motor Protein Motb; Endoflagellar Motor Protein; Endoflagellar Motor Protein B

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MSRPDHDDAEDAPRIIMPTPGGKRPEVEPEAAPGPADPPAPDPAPSVSDILSGFRFAGGDLPVMVAQAAPLLNLAHALRT
GQTPPAIGDLRRSLTGAARTYEAALATAGIVPDQARAAHYVVCATLDDVIRNTDWGAEWAVEGLVSTFHHDVHGGDKVFA
LLTHFQRTPRANRDLLLLIYLCLSLGFEGRARVSSRGAAELALVRENLFRTLRTEFDIVERDLSPLWQGEDAAHSPVRRS
VAFWSITGVILLALIGVFLVYTLLLNRAAEATLARLATLPPGAPPSLALPDPPAPDPVVEPPAPADPPVVTPEDPPQVPP
IDTFIAFLQPEVDDGLVRLYREGDAVLVRVANAGAFGSGSAEIEDDFIDVFDRIGQALAAEDFAVTVLGHTDNVAIRTAP
FPNNYFLSRARANAVRDVLLQYVDPVRVDIEGQGPDRPIASNITPAGQEANRRTEILVREPGDRVPDSLLTQGVQPAEEA
EPQEQTP

Sequences:

>Translated_487_residues
MSRPDHDDAEDAPRIIMPTPGGKRPEVEPEAAPGPADPPAPDPAPSVSDILSGFRFAGGDLPVMVAQAAPLLNLAHALRT
GQTPPAIGDLRRSLTGAARTYEAALATAGIVPDQARAAHYVVCATLDDVIRNTDWGAEWAVEGLVSTFHHDVHGGDKVFA
LLTHFQRTPRANRDLLLLIYLCLSLGFEGRARVSSRGAAELALVRENLFRTLRTEFDIVERDLSPLWQGEDAAHSPVRRS
VAFWSITGVILLALIGVFLVYTLLLNRAAEATLARLATLPPGAPPSLALPDPPAPDPVVEPPAPADPPVVTPEDPPQVPP
IDTFIAFLQPEVDDGLVRLYREGDAVLVRVANAGAFGSGSAEIEDDFIDVFDRIGQALAAEDFAVTVLGHTDNVAIRTAP
FPNNYFLSRARANAVRDVLLQYVDPVRVDIEGQGPDRPIASNITPAGQEANRRTEILVREPGDRVPDSLLTQGVQPAEEA
EPQEQTP
>Mature_486_residues
SRPDHDDAEDAPRIIMPTPGGKRPEVEPEAAPGPADPPAPDPAPSVSDILSGFRFAGGDLPVMVAQAAPLLNLAHALRTG
QTPPAIGDLRRSLTGAARTYEAALATAGIVPDQARAAHYVVCATLDDVIRNTDWGAEWAVEGLVSTFHHDVHGGDKVFAL
LTHFQRTPRANRDLLLLIYLCLSLGFEGRARVSSRGAAELALVRENLFRTLRTEFDIVERDLSPLWQGEDAAHSPVRRSV
AFWSITGVILLALIGVFLVYTLLLNRAAEATLARLATLPPGAPPSLALPDPPAPDPVVEPPAPADPPVVTPEDPPQVPPI
DTFIAFLQPEVDDGLVRLYREGDAVLVRVANAGAFGSGSAEIEDDFIDVFDRIGQALAAEDFAVTVLGHTDNVAIRTAPF
PNNYFLSRARANAVRDVLLQYVDPVRVDIEGQGPDRPIASNITPAGQEANRRTEILVREPGDRVPDSLLTQGVQPAEEAE
PQEQTP

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52209; Mature: 52078

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPDHDDAEDAPRIIMPTPGGKRPEVEPEAAPGPADPPAPDPAPSVSDILSGFRFAGGD
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
LPVMVAQAAPLLNLAHALRTGQTPPAIGDLRRSLTGAARTYEAALATAGIVPDQARAAHY
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
VVCATLDDVIRNTDWGAEWAVEGLVSTFHHDVHGGDKVFALLTHFQRTPRANRDLLLLIY
EEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
LCLSLGFEGRARVSSRGAAELALVRENLFRTLRTEFDIVERDLSPLWQGEDAAHSPVRRS
HHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VAFWSITGVILLALIGVFLVYTLLLNRAAEATLARLATLPPGAPPSLALPDPPAPDPVVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PPAPADPPVVTPEDPPQVPPIDTFIAFLQPEVDDGLVRLYREGDAVLVRVANAGAFGSGS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCC
AEIEDDFIDVFDRIGQALAAEDFAVTVLGHTDNVAIRTAPFPNNYFLSRARANAVRDVLL
CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
QYVDPVRVDIEGQGPDRPIASNITPAGQEANRRTEILVREPGDRVPDSLLTQGVQPAEEA
HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCHHHC
EPQEQTP
CCCCCCC
>Mature Secondary Structure 
SRPDHDDAEDAPRIIMPTPGGKRPEVEPEAAPGPADPPAPDPAPSVSDILSGFRFAGGD
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
LPVMVAQAAPLLNLAHALRTGQTPPAIGDLRRSLTGAARTYEAALATAGIVPDQARAAHY
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
VVCATLDDVIRNTDWGAEWAVEGLVSTFHHDVHGGDKVFALLTHFQRTPRANRDLLLLIY
EEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
LCLSLGFEGRARVSSRGAAELALVRENLFRTLRTEFDIVERDLSPLWQGEDAAHSPVRRS
HHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VAFWSITGVILLALIGVFLVYTLLLNRAAEATLARLATLPPGAPPSLALPDPPAPDPVVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PPAPADPPVVTPEDPPQVPPIDTFIAFLQPEVDDGLVRLYREGDAVLVRVANAGAFGSGS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCC
AEIEDDFIDVFDRIGQALAAEDFAVTVLGHTDNVAIRTAPFPNNYFLSRARANAVRDVLL
CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
QYVDPVRVDIEGQGPDRPIASNITPAGQEANRRTEILVREPGDRVPDSLLTQGVQPAEEA
HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCHHHC
EPQEQTP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA