| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is siaT [H]
Identifier: 89055370
GI number: 89055370
Start: 2898866
End: 2901085
Strand: Direct
Name: siaT [H]
Synonym: Jann_2879
Alternate gene names: 89055370
Gene position: 2898866-2901085 (Clockwise)
Preceding gene: 89055369
Following gene: 89055371
Centisome position: 67.13
GC content: 63.51
Gene sequence:
>2220_bases ATGGCAGATCAGACCGCACAGCAGGACGACACGCGCACGTTGACCGAAGAGGAACTTGCCGAGATCGAGCGCAAGTATGA CGAGGGCGCCGCCACTCGGCCCGTCGGCCCGCGGCTGGGGTTGGCCCTGCGCGCCGTGGCGCTGACATTCGCCGTCTACC ATTACCTGACCGCAGGCTTCGCCCTGCCCGCCGACCACTGGCACATGGGCTGGCATCTGGCGGGCCTGTTCATCCTGACC TACGCCTTCTTCCCCCTCTTCAAGACCAAACGCGCGTTCGAGATGCGCCCCAGCGCGTTCCGCGTCGGCAATGTGCCGAT CTTCGATTTCGTCCTGATGATCCTTGGCGTCGGCGCGGCCCTTTATCTGGGGCTCGCGTGGCGCGGCATCCCCGGGCTCG GCATCGACGAGCAGACGTTTCGCATGGGCAACCCGAACAATTACGACATCTTCTTCGGCCTCGTGCTGATCATCCTGGTC CTCGACATCGCGCGCCGGACATTGGGCTGGATCCTGCCCGCGATCATCTGCGTCTTCATCGCCTATGCGCTGTTCGGCCC GTGGTTTCCGGGCGTGTTGCAACATCCCGGCGTGCGGTTCCGCACCTTCGTGTCGTCGATGTATTTCCCGCAGGAAGGCA TCTTTGGCGTCACGCTCTGGGTCGTGTCCACCATCGTCTTCCACTTCGTGCTGTTCGGCGTGATCGCGCAGCGCACGGGC CTGGGGCAGTTGTTCATCGACAACGCGACGATCCTTGCGGGGCGCTATACGGGCGGACCTGCGAAAGTGTCCGTCGTGTC CTCGGCCTTTTTTGGCACGATCTCGGGCAGTTCAGTGGCCAACACCGTCTCCACCGGCGCGCTGACCATCCCCAACATGA AACGGCTGGGGTATCCGGGCCATTTCGCGGGCGGGGTGGAGGCAGCCTCCTCCGCCGGTGGCCAGATCACGCCGCCGATC ATGGGCGCGGCCGCCTTCATCATGGCCGAATTCCTGGAGGTCCCCTACACCACCATCGTCATCGCCGCGATCTTCCCGGC GCTGCTGCACTATGTGGGCGTCTTCACCGTTGTGCACCTGATGGCCAAAAAGCTGGACCTTAAGGGCCTGACCAAAGACG CGATGCCGCAATTCAAGGCGGTCTGGAAGGAGGGATGGGCCAATATCGTGCCGCTGGTGGCGCTGCTGGTCGTCCTCTTC TCCGGCTACACGCCTTATATGTCGGCCTTCTGCGGGATATCCGTGGCGATCATCGCGGGCATGAGCCGTGTGCGGGAGCC GCTGTCGCTGATCTATGCCATAGCCTTCATCGCCTTCGTGATCTGGAAATACATGGGTGGCGGGTTTGACATCGGCATGT CGGGCATCCTGATCGCCTGCGCCGTCTTGGGGTCGTTCAACCCGCAGGCCCGGGTGAAGCTGCCGGAAATGGCCACCACG TTCGAGACGGGCGTGAAATACGCGCTGGCCGTGGGGGCGGCCTCGGCGGCGGTGGGCATCGTGGTGGGGGTGATCAACAC CACGGGCATCGGCTTCCGCATCGGCTTCATGGTGACGCAGGGCGCGTCCAATCTGGGCTCCGACCTGCATGTGCTGTTTG CCATGACAGGGCTGCAATTCATCACCGTGGAAGATCTGACGCTGTTCATCAGCCTCGTCTTCATCGCCGTGGCCTGCATC CTGATGGGCGCGGGCGTGCCGACGACGGCGCTCTATATCATGCTGGTCTCCGTCGCGCAGCCGGCGCTGTCGCAACTGGG CATTCCGCCCATCGCGTCGCATATGTTCGTACTCTATTACGGGGTCGTGGCGGAGATCACGCCACCGGTCTGCACATCGG CCTATGCGGCAGCAGCCATCGCCAATTCCAACCCGTTCAGAACCGGCATATCCGCCTTCACCCTGGGCCTTGGCAAGGTG GTGGCGCCGATGGCCTTCGTCTATGCGCCGGTCCTGTTGTTCGTATCCTCAACCGGGTTCGACTTCTGGGAATTCACCTA CACCGCCGCCAGTTGCATCGCGGGGGTCGTGGCGCTGTCCACGGCGGTGGTCGGCTACTTCTACGCGCCGGTGAATATCG CCTTCCGGTGGTTGCTGGCGTTTGCCGGGCTGGTCTTCATCGCGCCATCCATTCAGGCCGATATCTTCGCGCTGGTCCTG TGCACGCCGGTGATCATCAGCCAGTTGGTGAAGCGCCGCACGGTGGCCCCAGCCGGATGA
Upstream 100 bases:
>100_bases CGGGCCTGATGGAGTGATCGCTCCACCCGTTTGAAGACTTCTGGGGCGTCCGAAGCGGGCGCCCCAGTCACAAGAGATAC CAGAACCGGCAGGGGCATCG
Downstream 100 bases:
>100_bases ACGACGACACCACGAGTGTTCTGGGCGCGGGCATCGTGGGCCTGTGTTGCGCGCTGTCCTTGGCCGAGCGGGGGCACAAG GTGCGCGTGATTGACCGTGA
Product: TRAP transporter, 4TM/12TM fusion protein
Products: NA
Alternate protein names: N-acetylneuraminic acid permease; N-acetylneuraminic acid transporter; Neu5Ac permease [H]
Number of amino acids: Translated: 739; Mature: 738
Protein sequence:
>739_residues MADQTAQQDDTRTLTEEELAEIERKYDEGAATRPVGPRLGLALRAVALTFAVYHYLTAGFALPADHWHMGWHLAGLFILT YAFFPLFKTKRAFEMRPSAFRVGNVPIFDFVLMILGVGAALYLGLAWRGIPGLGIDEQTFRMGNPNNYDIFFGLVLIILV LDIARRTLGWILPAIICVFIAYALFGPWFPGVLQHPGVRFRTFVSSMYFPQEGIFGVTLWVVSTIVFHFVLFGVIAQRTG LGQLFIDNATILAGRYTGGPAKVSVVSSAFFGTISGSSVANTVSTGALTIPNMKRLGYPGHFAGGVEAASSAGGQITPPI MGAAAFIMAEFLEVPYTTIVIAAIFPALLHYVGVFTVVHLMAKKLDLKGLTKDAMPQFKAVWKEGWANIVPLVALLVVLF SGYTPYMSAFCGISVAIIAGMSRVREPLSLIYAIAFIAFVIWKYMGGGFDIGMSGILIACAVLGSFNPQARVKLPEMATT FETGVKYALAVGAASAAVGIVVGVINTTGIGFRIGFMVTQGASNLGSDLHVLFAMTGLQFITVEDLTLFISLVFIAVACI LMGAGVPTTALYIMLVSVAQPALSQLGIPPIASHMFVLYYGVVAEITPPVCTSAYAAAAIANSNPFRTGISAFTLGLGKV VAPMAFVYAPVLLFVSSTGFDFWEFTYTAASCIAGVVALSTAVVGYFYAPVNIAFRWLLAFAGLVFIAPSIQADIFALVL CTPVIISQLVKRRTVAPAG
Sequences:
>Translated_739_residues MADQTAQQDDTRTLTEEELAEIERKYDEGAATRPVGPRLGLALRAVALTFAVYHYLTAGFALPADHWHMGWHLAGLFILT YAFFPLFKTKRAFEMRPSAFRVGNVPIFDFVLMILGVGAALYLGLAWRGIPGLGIDEQTFRMGNPNNYDIFFGLVLIILV LDIARRTLGWILPAIICVFIAYALFGPWFPGVLQHPGVRFRTFVSSMYFPQEGIFGVTLWVVSTIVFHFVLFGVIAQRTG LGQLFIDNATILAGRYTGGPAKVSVVSSAFFGTISGSSVANTVSTGALTIPNMKRLGYPGHFAGGVEAASSAGGQITPPI MGAAAFIMAEFLEVPYTTIVIAAIFPALLHYVGVFTVVHLMAKKLDLKGLTKDAMPQFKAVWKEGWANIVPLVALLVVLF SGYTPYMSAFCGISVAIIAGMSRVREPLSLIYAIAFIAFVIWKYMGGGFDIGMSGILIACAVLGSFNPQARVKLPEMATT FETGVKYALAVGAASAAVGIVVGVINTTGIGFRIGFMVTQGASNLGSDLHVLFAMTGLQFITVEDLTLFISLVFIAVACI LMGAGVPTTALYIMLVSVAQPALSQLGIPPIASHMFVLYYGVVAEITPPVCTSAYAAAAIANSNPFRTGISAFTLGLGKV VAPMAFVYAPVLLFVSSTGFDFWEFTYTAASCIAGVVALSTAVVGYFYAPVNIAFRWLLAFAGLVFIAPSIQADIFALVL CTPVIISQLVKRRTVAPAG >Mature_738_residues ADQTAQQDDTRTLTEEELAEIERKYDEGAATRPVGPRLGLALRAVALTFAVYHYLTAGFALPADHWHMGWHLAGLFILTY AFFPLFKTKRAFEMRPSAFRVGNVPIFDFVLMILGVGAALYLGLAWRGIPGLGIDEQTFRMGNPNNYDIFFGLVLIILVL DIARRTLGWILPAIICVFIAYALFGPWFPGVLQHPGVRFRTFVSSMYFPQEGIFGVTLWVVSTIVFHFVLFGVIAQRTGL GQLFIDNATILAGRYTGGPAKVSVVSSAFFGTISGSSVANTVSTGALTIPNMKRLGYPGHFAGGVEAASSAGGQITPPIM GAAAFIMAEFLEVPYTTIVIAAIFPALLHYVGVFTVVHLMAKKLDLKGLTKDAMPQFKAVWKEGWANIVPLVALLVVLFS GYTPYMSAFCGISVAIIAGMSRVREPLSLIYAIAFIAFVIWKYMGGGFDIGMSGILIACAVLGSFNPQARVKLPEMATTF ETGVKYALAVGAASAAVGIVVGVINTTGIGFRIGFMVTQGASNLGSDLHVLFAMTGLQFITVEDLTLFISLVFIAVACIL MGAGVPTTALYIMLVSVAQPALSQLGIPPIASHMFVLYYGVVAEITPPVCTSAYAAAAIANSNPFRTGISAFTLGLGKVV APMAFVYAPVLLFVSSTGFDFWEFTYTAASCIAGVVALSTAVVGYFYAPVNIAFRWLLAFAGLVFIAPSIQADIFALVLC TPVIISQLVKRRTVAPAG
Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid [H]
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the TRAP transporter large permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010656 - InterPro: IPR007387 - InterPro: IPR004681 [H]
Pfam domain/function: PF06808 DctM; PF04290 DctQ [H]
EC number: NA
Molecular weight: Translated: 78976; Mature: 78845
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADQTAQQDDTRTLTEEELAEIERKYDEGAATRPVGPRLGLALRAVALTFAVYHYLTAGF CCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC ALPADHWHMGWHLAGLFILTYAFFPLFKTKRAFEMRPSAFRVGNVPIFDFVLMILGVGAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH LYLGLAWRGIPGLGIDEQTFRMGNPNNYDIFFGLVLIILVLDIARRTLGWILPAIICVFI HHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYALFGPWFPGVLQHPGVRFRTFVSSMYFPQEGIFGVTLWVVSTIVFHFVLFGVIAQRTG HHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC LGQLFIDNATILAGRYTGGPAKVSVVSSAFFGTISGSSVANTVSTGALTIPNMKRLGYPG CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEECCCHHHCCCCC HFAGGVEAASSAGGQITPPIMGAAAFIMAEFLEVPYTTIVIAAIFPALLHYVGVFTVVHL CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH MAKKLDLKGLTKDAMPQFKAVWKEGWANIVPLVALLVVLFSGYTPYMSAFCGISVAIIAG HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MSRVREPLSLIYAIAFIAFVIWKYMGGGFDIGMSGILIACAVLGSFNPQARVKLPEMATT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHH FETGVKYALAVGAASAAVGIVVGVINTTGIGFRIGFMVTQGASNLGSDLHVLFAMTGLQF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCHHHHHHHHHCCCE ITVEDLTLFISLVFIAVACILMGAGVPTTALYIMLVSVAQPALSQLGIPPIASHMFVLYY EEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GVVAEITPPVCTSAYAAAAIANSNPFRTGISAFTLGLGKVVAPMAFVYAPVLLFVSSTGF HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DFWEFTYTAASCIAGVVALSTAVVGYFYAPVNIAFRWLLAFAGLVFIAPSIQADIFALVL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH CTPVIISQLVKRRTVAPAG HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ADQTAQQDDTRTLTEEELAEIERKYDEGAATRPVGPRLGLALRAVALTFAVYHYLTAGF CCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC ALPADHWHMGWHLAGLFILTYAFFPLFKTKRAFEMRPSAFRVGNVPIFDFVLMILGVGAA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH LYLGLAWRGIPGLGIDEQTFRMGNPNNYDIFFGLVLIILVLDIARRTLGWILPAIICVFI HHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYALFGPWFPGVLQHPGVRFRTFVSSMYFPQEGIFGVTLWVVSTIVFHFVLFGVIAQRTG HHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC LGQLFIDNATILAGRYTGGPAKVSVVSSAFFGTISGSSVANTVSTGALTIPNMKRLGYPG CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCEECCCHHHCCCCC HFAGGVEAASSAGGQITPPIMGAAAFIMAEFLEVPYTTIVIAAIFPALLHYVGVFTVVHL CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH MAKKLDLKGLTKDAMPQFKAVWKEGWANIVPLVALLVVLFSGYTPYMSAFCGISVAIIAG HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MSRVREPLSLIYAIAFIAFVIWKYMGGGFDIGMSGILIACAVLGSFNPQARVKLPEMATT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHH FETGVKYALAVGAASAAVGIVVGVINTTGIGFRIGFMVTQGASNLGSDLHVLFAMTGLQF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCHHHHHHHHHCCCE ITVEDLTLFISLVFIAVACILMGAGVPTTALYIMLVSVAQPALSQLGIPPIASHMFVLYY EEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GVVAEITPPVCTSAYAAAAIANSNPFRTGISAFTLGLGKVVAPMAFVYAPVLLFVSSTGF HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DFWEFTYTAASCIAGVVALSTAVVGYFYAPVNIAFRWLLAFAGLVFIAPSIQADIFALVL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH CTPVIISQLVKRRTVAPAG HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]