Click here to switch to the map view.

The map label for this gene is ydeL [H]

Identifier: 89055341

GI number: 89055341

Start: 2869461

End: 2870948

Strand: Reverse

Name: ydeL [H]

Synonym: Jann_2850

Alternate gene names: 89055341

Gene position: 2870948-2869461 (Counterclockwise)

Preceding gene: 89055344

Following gene: 89055334

Centisome position: 66.49

GC content: 66.2

Gene sequence:

>1488_bases
ATGGCCATCATTTCAGAGCATCATATCTTCCTTTCGGACGACGCAAATGTGGGCCTGCAAACCCGCCTGAAAGACGCCAT
CACCCGCGCGATCTGGGATGGTCGCTTCGCGCCGGGGGACCGCCTTCCCGCCACACGTGCCCTGGCGCGACACCTTGGGA
TCAGCCGGATCACCGTGAGTCTGGCCTATGATGCGCTTTTATCGACGGGCTACATCGTCTCCATCGCGCGGTCGGGGTAT
TTCGTGGCCAGTGACGCGCCCACGCGGATGGAGATCGTGACGCCCGGCAAGGGCGATGCGCGCGACCGGTTGGATTGGGC
CGCGCGCCTGGGGCCTGTGCCGCCCGCCCTTGGGGCGCAGGCCACCCCCGCCGATTGGCGCCGGTTTCGCTATCCGTTCA
TTTTTGGGGAGCCCGATGTGGCACGCTTCCCGGTCGATGATTGGCGCGATTGTGTGCGTCGCGGTCTTGGCAAGCGCCAT
TTTGAGCAGGTCGCCGATGACGCCAGCGACCGCGACGACCCGTTTCTGGTGGAGCAGATCGTGCGCCGGTCGGTCTCTGG
GCGCGGTGTGGCGGCGACGGTGGATGAGGTTCTGGTGACGGCGGGGGCGCAGAATGCGCTGTGGCTGATGGTGCAGGTTC
TTTTTGGCGGGCAGGGCGGGGAGGTGGCGATGGAGGATCCGGGCTACCCGGAGTTGCGCAACCTCCTGCGCCAGCAGCGG
TTGACGATCCACCCGGTCCCCGTGGACCGCGACGGCCTGAAGGTCGACCGCATCCCCGAGGGCGTGCGTGCGGTTTTCGT
GACGCCCTCCCATCAGGCACCGACGGGGGCCACGATGTCGATGGCGCGGCGACAGGCCTTGCTGGAGCGGGCGGAGGCGG
AGGATTTCGTCGTGATCGAGGACGATTACGATTATGAGATGAGCTATGCCTCCCCATCCCTGCCTGCCCTGAAATCACTC
GATCAGCGGGGCCGGGTGATCTATATCGGCAGCTTCTCTAAATCGATCTTTCCCGGTCTTCGCTTGGGGTATCTGACCGC
CGATGCCCGTGTCGTGGAACATGCCCGCGCGATCCGCACGTTATCGGAGCGTCACCCGCCGGGGCTGACCCAACGCACGG
TCGCCTATTTCCTGTCGGAGGGGCATTACAACAGCCATTCGCGCCGGATGCGGATGCGGATGGCGCGCCGCAATGAAGTG
TTGCGGGAGGCTTTGGCGGAGCACGGGCTGACGCCTGCCCTGCGGCGCGCGACCGGGGGCACGACGCTCTGGCTCCTGGG
GCCGGAGGATCTGGATGCGGATGCGCTAGCGGTGTCGTTGCGCGACAAGAGCGTGCTGATCGAGGCTGGATCGGCCTTCT
ACGCGGGGGGCGACGCGCCGCGCAATCGGGTGCGGTTGGGCTTCGCCACGATCGAGACGGCGCGGATTGCGGACGGTGTG
GCGCTAATTGCCGAGGCGATCAGGGAGCAGGCTCCAACCCCGCGCTAA

Upstream 100 bases:

>100_bases
GCACCATGGCAGCCGACCGTCCGCAACCCCTACCGCGCCCTTGGCCTTGTTGTTTTCGGCGGCATTCCCCATTCTGGCCT
TATCCAGATCGCGAGTCCTT

Downstream 100 bases:

>100_bases
GGGTGGGCTGCAAGGTTGAGAACCCTACCTAAAACTATGTTTTACCTATATAATTATGTTATTATATAATAAATTAAACA
TCACGCAAAACGCCGTGCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MAIISEHHIFLSDDANVGLQTRLKDAITRAIWDGRFAPGDRLPATRALARHLGISRITVSLAYDALLSTGYIVSIARSGY
FVASDAPTRMEIVTPGKGDARDRLDWAARLGPVPPALGAQATPADWRRFRYPFIFGEPDVARFPVDDWRDCVRRGLGKRH
FEQVADDASDRDDPFLVEQIVRRSVSGRGVAATVDEVLVTAGAQNALWLMVQVLFGGQGGEVAMEDPGYPELRNLLRQQR
LTIHPVPVDRDGLKVDRIPEGVRAVFVTPSHQAPTGATMSMARRQALLERAEAEDFVVIEDDYDYEMSYASPSLPALKSL
DQRGRVIYIGSFSKSIFPGLRLGYLTADARVVEHARAIRTLSERHPPGLTQRTVAYFLSEGHYNSHSRRMRMRMARRNEV
LREALAEHGLTPALRRATGGTTLWLLGPEDLDADALAVSLRDKSVLIEAGSAFYAGGDAPRNRVRLGFATIETARIADGV
ALIAEAIREQAPTPR

Sequences:

>Translated_495_residues
MAIISEHHIFLSDDANVGLQTRLKDAITRAIWDGRFAPGDRLPATRALARHLGISRITVSLAYDALLSTGYIVSIARSGY
FVASDAPTRMEIVTPGKGDARDRLDWAARLGPVPPALGAQATPADWRRFRYPFIFGEPDVARFPVDDWRDCVRRGLGKRH
FEQVADDASDRDDPFLVEQIVRRSVSGRGVAATVDEVLVTAGAQNALWLMVQVLFGGQGGEVAMEDPGYPELRNLLRQQR
LTIHPVPVDRDGLKVDRIPEGVRAVFVTPSHQAPTGATMSMARRQALLERAEAEDFVVIEDDYDYEMSYASPSLPALKSL
DQRGRVIYIGSFSKSIFPGLRLGYLTADARVVEHARAIRTLSERHPPGLTQRTVAYFLSEGHYNSHSRRMRMRMARRNEV
LREALAEHGLTPALRRATGGTTLWLLGPEDLDADALAVSLRDKSVLIEAGSAFYAGGDAPRNRVRLGFATIETARIADGV
ALIAEAIREQAPTPR
>Mature_494_residues
AIISEHHIFLSDDANVGLQTRLKDAITRAIWDGRFAPGDRLPATRALARHLGISRITVSLAYDALLSTGYIVSIARSGYF
VASDAPTRMEIVTPGKGDARDRLDWAARLGPVPPALGAQATPADWRRFRYPFIFGEPDVARFPVDDWRDCVRRGLGKRHF
EQVADDASDRDDPFLVEQIVRRSVSGRGVAATVDEVLVTAGAQNALWLMVQVLFGGQGGEVAMEDPGYPELRNLLRQQRL
TIHPVPVDRDGLKVDRIPEGVRAVFVTPSHQAPTGATMSMARRQALLERAEAEDFVVIEDDYDYEMSYASPSLPALKSLD
QRGRVIYIGSFSKSIFPGLRLGYLTADARVVEHARAIRTLSERHPPGLTQRTVAYFLSEGHYNSHSRRMRMRMARRNEVL
REALAEHGLTPALRRATGGTTLWLLGPEDLDADALAVSLRDKSVLIEAGSAFYAGGDAPRNRVRLGFATIETARIADGVA
LIAEAIREQAPTPR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=25.8675078864353, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=25.8675078864353, Blast_Score=95, Evalue=2e-19,
Organism=Escherichia coli, GI1790797, Length=489, Percent_Identity=27.8118609406953, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787710, Length=459, Percent_Identity=28.5403050108932, Blast_Score=138, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6321236, Length=283, Percent_Identity=24.3816254416961, Blast_Score=83, Evalue=9e-17,
Organism=Drosophila melanogaster, GI21356535, Length=324, Percent_Identity=23.1481481481481, Blast_Score=90, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54606; Mature: 54475

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIISEHHIFLSDDANVGLQTRLKDAITRAIWDGRFAPGDRLPATRALARHLGISRITVS
CCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHH
LAYDALLSTGYIVSIARSGYFVASDAPTRMEIVTPGKGDARDRLDWAARLGPVPPALGAQ
HHHHHHHHCCEEEEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
ATPADWRRFRYPFIFGEPDVARFPVDDWRDCVRRGLGKRHFEQVADDASDRDDPFLVEQI
CCCHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHH
VRRSVSGRGVAATVDEVLVTAGAQNALWLMVQVLFGGQGGEVAMEDPGYPELRNLLRQQR
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
LTIHPVPVDRDGLKVDRIPEGVRAVFVTPSHQAPTGATMSMARRQALLERAEAEDFVVIE
CEEECCCCCCCCCEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
DDYDYEMSYASPSLPALKSLDQRGRVIYIGSFSKSIFPGLRLGYLTADARVVEHARAIRT
CCCCCEECCCCCCCHHHHHHHHCCCEEEEECCCHHHCCCCEEEEEEHHHHHHHHHHHHHH
LSERHPPGLTQRTVAYFLSEGHYNSHSRRMRMRMARRNEVLREALAEHGLTPALRRATGG
HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
TTLWLLGPEDLDADALAVSLRDKSVLIEAGSAFYAGGDAPRNRVRLGFATIETARIADGV
CEEEEECCCCCCCCCEEEEECCCEEEEECCCEEECCCCCCCCCEEEEEEEEEHHHHHHHH
ALIAEAIREQAPTPR
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIISEHHIFLSDDANVGLQTRLKDAITRAIWDGRFAPGDRLPATRALARHLGISRITVS
CEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHH
LAYDALLSTGYIVSIARSGYFVASDAPTRMEIVTPGKGDARDRLDWAARLGPVPPALGAQ
HHHHHHHHCCEEEEEECCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCC
ATPADWRRFRYPFIFGEPDVARFPVDDWRDCVRRGLGKRHFEQVADDASDRDDPFLVEQI
CCCHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHH
VRRSVSGRGVAATVDEVLVTAGAQNALWLMVQVLFGGQGGEVAMEDPGYPELRNLLRQQR
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
LTIHPVPVDRDGLKVDRIPEGVRAVFVTPSHQAPTGATMSMARRQALLERAEAEDFVVIE
CEEECCCCCCCCCEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
DDYDYEMSYASPSLPALKSLDQRGRVIYIGSFSKSIFPGLRLGYLTADARVVEHARAIRT
CCCCCEECCCCCCCHHHHHHHHCCCEEEEECCCHHHCCCCEEEEEEHHHHHHHHHHHHHH
LSERHPPGLTQRTVAYFLSEGHYNSHSRRMRMRMARRNEVLREALAEHGLTPALRRATGG
HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
TTLWLLGPEDLDADALAVSLRDKSVLIEAGSAFYAGGDAPRNRVRLGFATIETARIADGV
CEEEEECCCCCCCCCEEEEECCCEEEEECCCEEECCCCCCCCCEEEEEEEEEHHHHHHHH
ALIAEAIREQAPTPR
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]