| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ppdK [H]
Identifier: 89055221
GI number: 89055221
Start: 2740871
End: 2743408
Strand: Reverse
Name: ppdK [H]
Synonym: Jann_2730
Alternate gene names: 89055221
Gene position: 2743408-2740871 (Counterclockwise)
Preceding gene: 89055222
Following gene: 89055220
Centisome position: 63.53
GC content: 63.71
Gene sequence:
>2538_bases ATGCTTACCACGCCCGATTTCACCGAGATCACGCCCACCGCTGACATCCGTAAGGCGCGGCATGGGAACCGCGCGAAATG CCTGCAACGGCTGGCGCGTCTGGATATGCCGGTGCCCCAGACCGTCGCGCTCAGCTTTGAGACAGTGCGCGCGATTGCAG ACGGGCGGATGCCGGATCTGGAGGCTTTGGTCGGGATTTTCGGGCCGGGCGCGCTCCTGTCTGTTCGCTCGTCGTCCGAG ACGCCTGATTGGGGCGGGCCGGGCACGATCCTGAACGTGGGCATGTGTGACGCGACCGCCGACGCGCTGTCCGAGACCCA CGGTCCTGATGTGGCAGGCGCGGTCTACACGAATTTCATCCGCTCCTACGCCGTCGATGTGCACCGCCTGGATGCCGAAG AATTTGAGAGCCCGATCACGCCGCGCCTCGCCAAACAGGCCTATGAGGCCGATATGGAGGAGCCATTTCCCCAGGATCCA ACCGTTCAGTTGGCCGAAGTCTTGCGGTCGATGGCGCGGGCCTGGGAAGGCACGACCGCGCGGCTATTGCGCCAGGCCCA GGGGGCACCTGCGGACGCCGGTCTGGGGCTTGTGGTGCAGAAGATGGCGCTTGGGCCGGCCCGGGAGATCTCTGGCGCGG GCGTGGTGCAATTCATCTCAAGCGAAACGGGCGAGCCGCAGGTCACCGGGCGTTATCTGCCGCGCGGGCAGGGGCGTCAG GCCCTCACCGAAGGCGCGGCCCAGTTTATCGAATGTGATCCGCGCGGGCCTGCGTTGGAGGATGTGGCCCCGGATCAGGT CCAGGCGCTGCGCGATGCCCACGCGCTGATGCGCATGCGGTTGCGCGAGGAGATGCAGATTGAGTTCACGCTGATGGACG GCGCCTTGTCGATCCTGGATGCCGTGCGCACGCCCCGCTCGGCCCGCGCGGAAGTGGAGGTCGCGGTGGCCTTGGCCCTG TCCGGCGTGATCCCACAGGAGGAGGCGTTGACCCGTATCCCACCTTTCACCCTGAACGGCCTGCTGCACCGCCAGATCGA GGCCGGTGCGAAACGGGATGTGCTGACCACCGGGATTCCCGCAGCCCCCGGTGCCGCGACGGGCAAGATTGTCTTTTCCG CCGCCGCCGCTCAAGCCGCCGCCGCGCAGGGGGAGCCGTGTATTCTGGTGCGCCGGGAGACATCGCCCGAGGATATTCGC GGGATGCACGCAGCCCAGGCGATCTTGACGGAACGGGGCGGTGTGACCTCCCACGCGGCTGTGATCGCCCGTGGGTTGGG CCTTCCTTGCGTGGCGGGCGCAACAAAACTGCAACTCGACCAGCGCAAAAAGACCATCACCGTGCCGGGCCGCAAGGTGT TTCATGAAGGCGATATCATAACGCTCGACGGCTCGGCGGGTGAGGTGCTGGTTGGCGCGATCGAAATGGTGGAGCCTGCC CTTGGCGGGGCCTTTGCCACGCTCATGCAATGGGCCGATGAGGCGCGCGATATTGGCGTGCGCGCCAATGCCGATACACC CGAAGACGCGGCCATGGCACAACGGTTTGGCGTGGATGGCATCGGCCTTTGCCGGACAGAGCATATGTTTTTCGACGCCA ACCGCATGACGGTGATGCGCGAAATGATCTTTGCCGAGAATGCCGAAGATCGCGCGGCGTCGCTGGATCGTTTATTGCCG ATGCAACGTGACGATTTCGTCAAACTGCTTGAGTTGATGCAGGGCCAGCCCGTCACCATCCGCCTTTTTGACCCGCCGCT GCATGAGTTTCTGCCCCGGGACCGCGATGGCATCCGTGCCCTGGCTGAGGCGTTGGATTTGCCCGTCAGCCGGGTTGCGC AGCGGATCGAGGCCTTGCAGGAATTCAACCCGATGTTGGGGATGCGGGGCGTGAGACTGGGCATTACCGTGCCCGAGATT TACGAAATGCAAGCACGCGCGATTTTTGAGGCGACGGTCAAGTCGTCAAAAAAGGGCGCGCCGATTGTGCCGGAGATCAT GATCCCACTTGTCACTGCAGCGCGGGAAGTGGAGCTGGTGAAGGCCTCCATCGACGCTATCGCGGCCGAGGTTCGCGCCA AGACGAGATCGGATTTCACCTACCGGTTGGGAGTGATGGTCGAGACGCCGCGCGCGGCGCTCAGAGCCGGTGAAATTGCT GAGCATTCGGCATTTCTGTCTTTTGGAACCAATGACCTGACCCAGATGACTTATGGTCTCAGCCGCGATGATGCGGGACG GTTCATGTCGGCTTATGTGCAACAGGGCGTGTTCTCTGAGGACCCGTTCCGCGAGCTTGATGTCGACGGGGTGGGCGAAT TGGTCCATCTTGGCGCGGAACGGGGGCGGGCGGAGCGCCCGGACCTGACGCTGGCCTTGTGTGGTGAGCATGGGGGGCAC CCGGACGCCGTCGATTTCTCCCGCAAGGCGGGGTTCGACTATGTCTCCTGTTCACCGTACCGCGTCCCTGTAGCGAAATT GGCGGCGGCACAATTAGCCATCAAAGACAAAGGATTGGCGGGTGATGTTAATTCATGA
Upstream 100 bases:
>100_bases CAGCAACACCCCGCGCAAAACTGTCACATGAGTGTCCGGTTTACTTTACACTCATCCCTCGCGCTGTATCTTTTGCCGGT ATCAATTCGGAACCCGGCCC
Downstream 100 bases:
>100_bases CTTTAACATGAGTTAACTAAATCTTGCGGTCCTCCGAGGCATTTGCGCAGGATTAAGGGCGCATTTTGCCGAACTTAAGA AATGAGTTAACACCCTTTCA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MLTTPDFTEITPTADIRKARHGNRAKCLQRLARLDMPVPQTVALSFETVRAIADGRMPDLEALVGIFGPGALLSVRSSSE TPDWGGPGTILNVGMCDATADALSETHGPDVAGAVYTNFIRSYAVDVHRLDAEEFESPITPRLAKQAYEADMEEPFPQDP TVQLAEVLRSMARAWEGTTARLLRQAQGAPADAGLGLVVQKMALGPAREISGAGVVQFISSETGEPQVTGRYLPRGQGRQ ALTEGAAQFIECDPRGPALEDVAPDQVQALRDAHALMRMRLREEMQIEFTLMDGALSILDAVRTPRSARAEVEVAVALAL SGVIPQEEALTRIPPFTLNGLLHRQIEAGAKRDVLTTGIPAAPGAATGKIVFSAAAAQAAAAQGEPCILVRRETSPEDIR GMHAAQAILTERGGVTSHAAVIARGLGLPCVAGATKLQLDQRKKTITVPGRKVFHEGDIITLDGSAGEVLVGAIEMVEPA LGGAFATLMQWADEARDIGVRANADTPEDAAMAQRFGVDGIGLCRTEHMFFDANRMTVMREMIFAENAEDRAASLDRLLP MQRDDFVKLLELMQGQPVTIRLFDPPLHEFLPRDRDGIRALAEALDLPVSRVAQRIEALQEFNPMLGMRGVRLGITVPEI YEMQARAIFEATVKSSKKGAPIVPEIMIPLVTAAREVELVKASIDAIAAEVRAKTRSDFTYRLGVMVETPRAALRAGEIA EHSAFLSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFSEDPFRELDVDGVGELVHLGAERGRAERPDLTLALCGEHGGH PDAVDFSRKAGFDYVSCSPYRVPVAKLAAAQLAIKDKGLAGDVNS
Sequences:
>Translated_845_residues MLTTPDFTEITPTADIRKARHGNRAKCLQRLARLDMPVPQTVALSFETVRAIADGRMPDLEALVGIFGPGALLSVRSSSE TPDWGGPGTILNVGMCDATADALSETHGPDVAGAVYTNFIRSYAVDVHRLDAEEFESPITPRLAKQAYEADMEEPFPQDP TVQLAEVLRSMARAWEGTTARLLRQAQGAPADAGLGLVVQKMALGPAREISGAGVVQFISSETGEPQVTGRYLPRGQGRQ ALTEGAAQFIECDPRGPALEDVAPDQVQALRDAHALMRMRLREEMQIEFTLMDGALSILDAVRTPRSARAEVEVAVALAL SGVIPQEEALTRIPPFTLNGLLHRQIEAGAKRDVLTTGIPAAPGAATGKIVFSAAAAQAAAAQGEPCILVRRETSPEDIR GMHAAQAILTERGGVTSHAAVIARGLGLPCVAGATKLQLDQRKKTITVPGRKVFHEGDIITLDGSAGEVLVGAIEMVEPA LGGAFATLMQWADEARDIGVRANADTPEDAAMAQRFGVDGIGLCRTEHMFFDANRMTVMREMIFAENAEDRAASLDRLLP MQRDDFVKLLELMQGQPVTIRLFDPPLHEFLPRDRDGIRALAEALDLPVSRVAQRIEALQEFNPMLGMRGVRLGITVPEI YEMQARAIFEATVKSSKKGAPIVPEIMIPLVTAAREVELVKASIDAIAAEVRAKTRSDFTYRLGVMVETPRAALRAGEIA EHSAFLSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFSEDPFRELDVDGVGELVHLGAERGRAERPDLTLALCGEHGGH PDAVDFSRKAGFDYVSCSPYRVPVAKLAAAQLAIKDKGLAGDVNS >Mature_845_residues MLTTPDFTEITPTADIRKARHGNRAKCLQRLARLDMPVPQTVALSFETVRAIADGRMPDLEALVGIFGPGALLSVRSSSE TPDWGGPGTILNVGMCDATADALSETHGPDVAGAVYTNFIRSYAVDVHRLDAEEFESPITPRLAKQAYEADMEEPFPQDP TVQLAEVLRSMARAWEGTTARLLRQAQGAPADAGLGLVVQKMALGPAREISGAGVVQFISSETGEPQVTGRYLPRGQGRQ ALTEGAAQFIECDPRGPALEDVAPDQVQALRDAHALMRMRLREEMQIEFTLMDGALSILDAVRTPRSARAEVEVAVALAL SGVIPQEEALTRIPPFTLNGLLHRQIEAGAKRDVLTTGIPAAPGAATGKIVFSAAAAQAAAAQGEPCILVRRETSPEDIR GMHAAQAILTERGGVTSHAAVIARGLGLPCVAGATKLQLDQRKKTITVPGRKVFHEGDIITLDGSAGEVLVGAIEMVEPA LGGAFATLMQWADEARDIGVRANADTPEDAAMAQRFGVDGIGLCRTEHMFFDANRMTVMREMIFAENAEDRAASLDRLLP MQRDDFVKLLELMQGQPVTIRLFDPPLHEFLPRDRDGIRALAEALDLPVSRVAQRIEALQEFNPMLGMRGVRLGITVPEI YEMQARAIFEATVKSSKKGAPIVPEIMIPLVTAAREVELVKASIDAIAAEVRAKTRSDFTYRLGVMVETPRAALRAGEIA EHSAFLSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFSEDPFRELDVDGVGELVHLGAERGRAERPDLTLALCGEHGGH PDAVDFSRKAGFDYVSCSPYRVPVAKLAAAQLAIKDKGLAGDVNS
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=462, Percent_Identity=25.1082251082251, Blast_Score=106, Evalue=6e-24, Organism=Escherichia coli, GI1789193, Length=437, Percent_Identity=26.3157894736842, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI48994992, Length=459, Percent_Identity=24.8366013071895, Blast_Score=93, Evalue=8e-20, Organism=Escherichia coli, GI1787994, Length=461, Percent_Identity=27.3318872017354, Blast_Score=90, Evalue=7e-19, Organism=Escherichia coli, GI1788726, Length=468, Percent_Identity=23.5042735042735, Blast_Score=86, Evalue=8e-18,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 90905; Mature: 90905
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTTPDFTEITPTADIRKARHGNRAKCLQRLARLDMPVPQTVALSFETVRAIADGRMPDL CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH EALVGIFGPGALLSVRSSSETPDWGGPGTILNVGMCDATADALSETHGPDVAGAVYTNFI HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHH RSYAVDVHRLDAEEFESPITPRLAKQAYEADMEEPFPQDPTVQLAEVLRSMARAWEGTTA HHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH RLLRQAQGAPADAGLGLVVQKMALGPAREISGAGVVQFISSETGEPQVTGRYLPRGQGRQ HHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH ALTEGAAQFIECDPRGPALEDVAPDQVQALRDAHALMRMRLREEMQIEFTLMDGALSILD HHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHH AVRTPRSARAEVEVAVALALSGVIPQEEALTRIPPFTLNGLLHRQIEAGAKRDVLTTGIP HHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCC AAPGAATGKIVFSAAAAQAAAAQGEPCILVRRETSPEDIRGMHAAQAILTERGGVTSHAA CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHH VIARGLGLPCVAGATKLQLDQRKKTITVPGRKVFHEGDIITLDGSAGEVLVGAIEMVEPA HHHHCCCCCHHCCCHHHEECCCCCEEECCCHHEEECCCEEEECCCCCCHHHHHHHHHHHH LGGAFATLMQWADEARDIGVRANADTPEDAAMAQRFGVDGIGLCRTEHMFFDANRMTVMR HHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCEEECCHHHHHHH EMIFAENAEDRAASLDRLLPMQRDDFVKLLELMQGQPVTIRLFDPPLHEFLPRDRDGIRA HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHH LAEALDLPVSRVAQRIEALQEFNPMLGMRGVRLGITVPEIYEMQARAIFEATVKSSKKGA HHHHHCCCHHHHHHHHHHHHHHCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCC PIVPEIMIPLVTAAREVELVKASIDAIAAEVRAKTRSDFTYRLGVMVETPRAALRAGEIA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHCCHH EHSAFLSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFSEDPFRELDVDGVGELVHLGAE HHHHHEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH RGRAERPDLTLALCGEHGGHPDAVDFSRKAGFDYVSCSPYRVPVAKLAAAQLAIKDKGLA CCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCC GDVNS CCCCC >Mature Secondary Structure MLTTPDFTEITPTADIRKARHGNRAKCLQRLARLDMPVPQTVALSFETVRAIADGRMPDL CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH EALVGIFGPGALLSVRSSSETPDWGGPGTILNVGMCDATADALSETHGPDVAGAVYTNFI HHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHHHHH RSYAVDVHRLDAEEFESPITPRLAKQAYEADMEEPFPQDPTVQLAEVLRSMARAWEGTTA HHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH RLLRQAQGAPADAGLGLVVQKMALGPAREISGAGVVQFISSETGEPQVTGRYLPRGQGRQ HHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH ALTEGAAQFIECDPRGPALEDVAPDQVQALRDAHALMRMRLREEMQIEFTLMDGALSILD HHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHH AVRTPRSARAEVEVAVALALSGVIPQEEALTRIPPFTLNGLLHRQIEAGAKRDVLTTGIP HHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCC AAPGAATGKIVFSAAAAQAAAAQGEPCILVRRETSPEDIRGMHAAQAILTERGGVTSHAA CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHH VIARGLGLPCVAGATKLQLDQRKKTITVPGRKVFHEGDIITLDGSAGEVLVGAIEMVEPA HHHHCCCCCHHCCCHHHEECCCCCEEECCCHHEEECCCEEEECCCCCCHHHHHHHHHHHH LGGAFATLMQWADEARDIGVRANADTPEDAAMAQRFGVDGIGLCRTEHMFFDANRMTVMR HHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCEEECCHHHHHHH EMIFAENAEDRAASLDRLLPMQRDDFVKLLELMQGQPVTIRLFDPPLHEFLPRDRDGIRA HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCHHHHH LAEALDLPVSRVAQRIEALQEFNPMLGMRGVRLGITVPEIYEMQARAIFEATVKSSKKGA HHHHHCCCHHHHHHHHHHHHHHCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCC PIVPEIMIPLVTAAREVELVKASIDAIAAEVRAKTRSDFTYRLGVMVETPRAALRAGEIA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHCCHH EHSAFLSFGTNDLTQMTYGLSRDDAGRFMSAYVQQGVFSEDPFRELDVDGVGELVHLGAE HHHHHEECCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH RGRAERPDLTLALCGEHGGHPDAVDFSRKAGFDYVSCSPYRVPVAKLAAAQLAIKDKGLA CCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCC GDVNS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]