Click here to switch to the map view.

The map label for this gene is lsrB [H]

Identifier: 89055085

GI number: 89055085

Start: 2606748

End: 2607746

Strand: Direct

Name: lsrB [H]

Synonym: Jann_2594

Alternate gene names: 89055085

Gene position: 2606748-2607746 (Clockwise)

Preceding gene: 89055084

Following gene: 89055086

Centisome position: 60.37

GC content: 62.66

Gene sequence:

>999_bases
ATGAGTATCACAAGACGGATTTTCGGCGGCACGGCGCTCGCCGCGATGATGATGGCAGGCAGCATGGCGCAGGCGCAGGA
ACCGGTGCGCATCGCGCTGGTCGTCAAGGCGCTTGGCATTGGCTTCTTTGAGGCCGCAAACGACGGCGCGATGGAAGCGG
CGGAAGAGCTTGGCAATGTAGAGATCATCTATACCGGCCCCACCTCCACCACGGCGGAGGGCCAGATCGAGGTGATCAAC
TCACTGATCGCCCAGGGTGTGGACGCGATCGCCGTCTCCGCCAACGACCCCGACGCGTTGGTGCCGGTGCTACAACGCGC
CATGCAGCGCGGGATCGCCGTGATCTCATTTGACTCCGGCGTGGCGGAAGAAGGCCGGATGCTGCATCTGGCCCCGTCGT
CTGATGCGCTGATCGGGCGGACGATCATCCAGCTTGCCGCCGATCACCTGCCCGATGGCGGTCAGGTCGCGCTGTTGTCG
GCGACCGCCACATCGACCAACCAGAACACCTGGATTGCAGAGATGAATGCCGTGATGGGCGATTATCCCGACATCGAAGT
GGTGGCGACGGTCTACGGCGATGACCTGGCGGACCGGTCCTATCGCGAAGCCATTGGCCTGATGCAGACCTACCCTGATC
TGGACGCGATCATTGCGCCGACTTCCGTGGGCATCGTGGCCGCAGCGCAAGCCGTGTTGGATCAGGACATGGTCGGTCAG
GTGAACGTGACGGGCCTGGGCCTGCCATCGGAGATGGCAGGTGCCATCGAATCCGGTGCGTCCCAGTCTTTCGCGATCTG
GAACCCGATTGATCTGGGCTATGCCGCGACAATGCTCGCCTACGAGCTGTCCGCCAATGAGGTCACGGCAGAAGCCGGCG
CCACGATCCCGATGGGGCGCATGGGCGCGTTGGAGTTGGATGACACCACGACCGGTGCCATGGCCAATCCGTTCACCTAT
GATGCCTCCAACATCGAGCAATTCCGCGAGATCTTCTGA

Upstream 100 bases:

>100_bases
GCAGACATCAAACTGGTTGTGGCGCAAACAAGTGCCGCGGCGGACACAGGTTCGGGCTGAGACCGGGCCACAAAAGACTC
ATTATCTGGGAGGAATTGAC

Downstream 100 bases:

>100_bases
TCCAATGCGGTCTGCCCGGCGCGCGTGCCTGCGCGCCGGGCGTCTCTCTCGTCGCGGAACGCCTTTCATGCTCAAACTTG
CCCCCACGCCGTCCGATGAT

Product: putative periplasmic binding ABC transporter protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSITRRIFGGTALAAMMMAGSMAQAQEPVRIALVVKALGIGFFEAANDGAMEAAEELGNVEIIYTGPTSTTAEGQIEVIN
SLIAQGVDAIAVSANDPDALVPVLQRAMQRGIAVISFDSGVAEEGRMLHLAPSSDALIGRTIIQLAADHLPDGGQVALLS
ATATSTNQNTWIAEMNAVMGDYPDIEVVATVYGDDLADRSYREAIGLMQTYPDLDAIIAPTSVGIVAAAQAVLDQDMVGQ
VNVTGLGLPSEMAGAIESGASQSFAIWNPIDLGYAATMLAYELSANEVTAEAGATIPMGRMGALELDDTTTGAMANPFTY
DASNIEQFREIF

Sequences:

>Translated_332_residues
MSITRRIFGGTALAAMMMAGSMAQAQEPVRIALVVKALGIGFFEAANDGAMEAAEELGNVEIIYTGPTSTTAEGQIEVIN
SLIAQGVDAIAVSANDPDALVPVLQRAMQRGIAVISFDSGVAEEGRMLHLAPSSDALIGRTIIQLAADHLPDGGQVALLS
ATATSTNQNTWIAEMNAVMGDYPDIEVVATVYGDDLADRSYREAIGLMQTYPDLDAIIAPTSVGIVAAAQAVLDQDMVGQ
VNVTGLGLPSEMAGAIESGASQSFAIWNPIDLGYAATMLAYELSANEVTAEAGATIPMGRMGALELDDTTTGAMANPFTY
DASNIEQFREIF
>Mature_331_residues
SITRRIFGGTALAAMMMAGSMAQAQEPVRIALVVKALGIGFFEAANDGAMEAAEELGNVEIIYTGPTSTTAEGQIEVINS
LIAQGVDAIAVSANDPDALVPVLQRAMQRGIAVISFDSGVAEEGRMLHLAPSSDALIGRTIIQLAADHLPDGGQVALLSA
TATSTNQNTWIAEMNAVMGDYPDIEVVATVYGDDLADRSYREAIGLMQTYPDLDAIIAPTSVGIVAAAQAVLDQDMVGQV
NVTGLGLPSEMAGAIESGASQSFAIWNPIDLGYAATMLAYELSANEVTAEAGATIPMGRMGALELDDTTTGAMANPFTYD
ASNIEQFREIF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=272, Percent_Identity=36.3970588235294, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34570; Mature: 34439

Theoretical pI: Translated: 3.72; Mature: 3.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITRRIFGGTALAAMMMAGSMAQAQEPVRIALVVKALGIGFFEAANDGAMEAAEELGNV
CCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHEEHHHHHCCHHEECCCCCHHHHHHHHCCE
EIIYTGPTSTTAEGQIEVINSLIAQGVDAIAVSANDPDALVPVLQRAMQRGIAVISFDSG
EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCC
VAEEGRMLHLAPSSDALIGRTIIQLAADHLPDGGQVALLSATATSTNQNTWIAEMNAVMG
CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEHHHHHC
DYPDIEVVATVYGDDLADRSYREAIGLMQTYPDLDAIIAPTSVGIVAAAQAVLDQDMVGQ
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHHHHHHCCCE
VNVTGLGLPSEMAGAIESGASQSFAIWNPIDLGYAATMLAYELSANEVTAEAGATIPMGR
EEEEECCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCC
MGALELDDTTTGAMANPFTYDASNIEQFREIF
CCEEEECCCCCCCCCCCCEECHHHHHHHHHHC
>Mature Secondary Structure 
SITRRIFGGTALAAMMMAGSMAQAQEPVRIALVVKALGIGFFEAANDGAMEAAEELGNV
CCCHHHHHHHHHHHHHHHCCHHHHCCCHHHEEHHHHHCCHHEECCCCCHHHHHHHHCCE
EIIYTGPTSTTAEGQIEVINSLIAQGVDAIAVSANDPDALVPVLQRAMQRGIAVISFDSG
EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCC
VAEEGRMLHLAPSSDALIGRTIIQLAADHLPDGGQVALLSATATSTNQNTWIAEMNAVMG
CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEHHHHHC
DYPDIEVVATVYGDDLADRSYREAIGLMQTYPDLDAIIAPTSVGIVAAAQAVLDQDMVGQ
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHEECCCHHHHHHHHHHHHHHHCCCE
VNVTGLGLPSEMAGAIESGASQSFAIWNPIDLGYAATMLAYELSANEVTAEAGATIPMGR
EEEEECCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCC
MGALELDDTTTGAMANPFTYDASNIEQFREIF
CCEEEECCCCCCCCCCCCEECHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA