Click here to switch to the map view.

The map label for this gene is rbsA [H]

Identifier: 89054896

GI number: 89054896

Start: 2405373

End: 2406881

Strand: Reverse

Name: rbsA [H]

Synonym: Jann_2405

Alternate gene names: 89054896

Gene position: 2406881-2405373 (Counterclockwise)

Preceding gene: 89054897

Following gene: 89054895

Centisome position: 55.74

GC content: 62.69

Gene sequence:

>1509_bases
ATGCAAACCCTGACCTTCAAACATATGTCGAAGGCCTATAACGGCCTGCCCGCCCTGTCGGATGTCGCGATCTCGCTGTC
GGGGGGGCGGGTGCATGCCGTTATGGGCGAAAACGGTGCGGGCAAAAGCACCTTGATCAAGCTGATCGCAGGCGTCGTCA
AAGCGGATGGGTTGGAGGTTGAGAAGGACGGAAGTGCCGTTCCCCTGGCCTCCGCGCAGGATGCGCAGGACGCGGGCTTT
CGCTTCATCCATCAAGAGCTGAACATCGTCCCACAAATCTCGGTTGCCGAAAATATCCTGCTTGGTCACCGCTACCCCCG
GCGCTTCGGGCTGGCGGTGGATTGGCCTGCGGTGAAGGCGCGCGCGCGCGACGCGCTGGCCTTTCTTGGCGCAGATCACA
TCGACGTCCTGTCGCTTGCCGGTGATCTGCCAGCGGGCGACAAAATGCTGATCAAGATCGCCGCCGCTTTGGTGACTGAT
CCCGATAAGGACGTGCAGACCGACCTCTACGTTCTGGACGAACCGACCGCGGCCCTGACGGGGGCGGAATCCGAGATGTT
GTTTGCGGTGATCGAACGGCTGACGGCATCGGGGGCGGCCGTTCTTTACGTGTCGCACCGTATGGAGGAGGTCCTCCGCA
TCTGCGACGACGTCACGGTGCTGCGCAACGGGCGCCTTGTCTCCACCAACAAGACGCGCGACGTGACCAAGGATCAGATT
ATCCACGACATGACCGGGCGCGACGTCAAAGACGCCTATCCGCCCCGCGCGACGGGTATTGGCCGCGATGTCGTGGCACG
TCTTGATGGGGTTGCGACCTCTGCGCTGTCGGATCTTACCTTCACGCTGCGTGCGGGCGAAATCATCGGCGTTGCCGGGC
TGTCGGAGGCGGGTCAGACGCAGCTGCTGGAAATCTTCATGGGGCTCCACCCGGTCCGTGCAGGGCGCGTTGACTTCCAG
GGCGGTCCTCTGCCCCGAACCCCCGCGCGGGCCTGGGCCAGTGGCGTCGCGTACCTTCCCAAGGAACGCCGCAGCGAAGG
CCTGATGCTGGATATGTCTATTCGCGCCAACATCACCGCACCCCATCTGGGCGGCTACGGGCTGATCGCCAAACCGCGCC
GCGAAACGGATGGTGCCACCGCGATGGGCGGTCAGATGCGGATGAAATACGACGATATCGAACAGGCGGTCGGCCAGCTG
TCGGGCGGCAATCAGCAAAAGGTCGTCTTCGCGCGTGCCCTGTACGGGAGCCCCAGATTGCTGCTGCTCAATGAGCCCAC
ACGCGGCGTTGATGTGGGGGCAAAGTTCGATATCTATTCCACCGTTCGGGAGTTGAGCGGGCAGGGATGTGCCATCCTTC
TCACCTCTTCTGACCTGCCGGAGATGCTTGGCATGTGCGACCGCATCCTTGTCTTGCAGGACGGCCGCCAGACGCATCTG
CTTGACAGCGCCGCTTTGACCAGCGCAGCACTTCTGTCCCACTTCTATGCCCCCGATGCGAAAGCCTAG

Upstream 100 bases:

>100_bases
CAATGCTGGTCACCTCCGTCAACGCCGCCGAATAGATCCACCGCGCGACACCGGCGATTTGGTCGGTGTCGCGCAGGCGG
CGATCTGCGCCGTTGAGACG

Downstream 100 bases:

>100_bases
CGTATGATCAAAACCCTCCGCCAATCCGGGACGCTTCTGGGCGTCTTTGCGATCATCGCCTTCTTCGCCATCCAGCTGCC
CGATACGTTCCTGACACCGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MQTLTFKHMSKAYNGLPALSDVAISLSGGRVHAVMGENGAGKSTLIKLIAGVVKADGLEVEKDGSAVPLASAQDAQDAGF
RFIHQELNIVPQISVAENILLGHRYPRRFGLAVDWPAVKARARDALAFLGADHIDVLSLAGDLPAGDKMLIKIAAALVTD
PDKDVQTDLYVLDEPTAALTGAESEMLFAVIERLTASGAAVLYVSHRMEEVLRICDDVTVLRNGRLVSTNKTRDVTKDQI
IHDMTGRDVKDAYPPRATGIGRDVVARLDGVATSALSDLTFTLRAGEIIGVAGLSEAGQTQLLEIFMGLHPVRAGRVDFQ
GGPLPRTPARAWASGVAYLPKERRSEGLMLDMSIRANITAPHLGGYGLIAKPRRETDGATAMGGQMRMKYDDIEQAVGQL
SGGNQQKVVFARALYGSPRLLLLNEPTRGVDVGAKFDIYSTVRELSGQGCAILLTSSDLPEMLGMCDRILVLQDGRQTHL
LDSAALTSAALLSHFYAPDAKA

Sequences:

>Translated_502_residues
MQTLTFKHMSKAYNGLPALSDVAISLSGGRVHAVMGENGAGKSTLIKLIAGVVKADGLEVEKDGSAVPLASAQDAQDAGF
RFIHQELNIVPQISVAENILLGHRYPRRFGLAVDWPAVKARARDALAFLGADHIDVLSLAGDLPAGDKMLIKIAAALVTD
PDKDVQTDLYVLDEPTAALTGAESEMLFAVIERLTASGAAVLYVSHRMEEVLRICDDVTVLRNGRLVSTNKTRDVTKDQI
IHDMTGRDVKDAYPPRATGIGRDVVARLDGVATSALSDLTFTLRAGEIIGVAGLSEAGQTQLLEIFMGLHPVRAGRVDFQ
GGPLPRTPARAWASGVAYLPKERRSEGLMLDMSIRANITAPHLGGYGLIAKPRRETDGATAMGGQMRMKYDDIEQAVGQL
SGGNQQKVVFARALYGSPRLLLLNEPTRGVDVGAKFDIYSTVRELSGQGCAILLTSSDLPEMLGMCDRILVLQDGRQTHL
LDSAALTSAALLSHFYAPDAKA
>Mature_502_residues
MQTLTFKHMSKAYNGLPALSDVAISLSGGRVHAVMGENGAGKSTLIKLIAGVVKADGLEVEKDGSAVPLASAQDAQDAGF
RFIHQELNIVPQISVAENILLGHRYPRRFGLAVDWPAVKARARDALAFLGADHIDVLSLAGDLPAGDKMLIKIAAALVTD
PDKDVQTDLYVLDEPTAALTGAESEMLFAVIERLTASGAAVLYVSHRMEEVLRICDDVTVLRNGRLVSTNKTRDVTKDQI
IHDMTGRDVKDAYPPRATGIGRDVVARLDGVATSALSDLTFTLRAGEIIGVAGLSEAGQTQLLEIFMGLHPVRAGRVDFQ
GGPLPRTPARAWASGVAYLPKERRSEGLMLDMSIRANITAPHLGGYGLIAKPRRETDGATAMGGQMRMKYDDIEQAVGQL
SGGNQQKVVFARALYGSPRLLLLNEPTRGVDVGAKFDIYSTVRELSGQGCAILLTSSDLPEMLGMCDRILVLQDGRQTHL
LDSAALTSAALLSHFYAPDAKA

Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI9665248, Length=238, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI105990541, Length=227, Percent_Identity=25.9911894273128, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI31657092, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=25.2427184466019, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=25.2427184466019, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI150417984, Length=232, Percent_Identity=26.7241379310345, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1790190, Length=476, Percent_Identity=39.7058823529412, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1788472, Length=491, Percent_Identity=35.6415478615071, Blast_Score=305, Evalue=4e-84,
Organism=Escherichia coli, GI1788210, Length=482, Percent_Identity=37.551867219917, Blast_Score=289, Evalue=3e-79,
Organism=Escherichia coli, GI1787792, Length=491, Percent_Identity=35.234215885947, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI1789991, Length=516, Percent_Identity=33.7209302325581, Blast_Score=285, Evalue=6e-78,
Organism=Escherichia coli, GI1790525, Length=488, Percent_Identity=31.7622950819672, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI48995001, Length=503, Percent_Identity=32.4055666003976, Blast_Score=265, Evalue=7e-72,
Organism=Escherichia coli, GI1788897, Length=478, Percent_Identity=35.1464435146443, Blast_Score=263, Evalue=3e-71,
Organism=Escherichia coli, GI1788506, Length=527, Percent_Identity=23.719165085389, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48994943, Length=515, Percent_Identity=24.4660194174757, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=26.9387755102041, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=28.0952380952381, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=31.0185185185185, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI48994883, Length=220, Percent_Identity=29.0909090909091, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=27.1889400921659, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1790544, Length=254, Percent_Identity=26.3779527559055, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786398, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=25.1082251082251, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787712, Length=240, Percent_Identity=25.8333333333333, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=24.3697478991597, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=28.7081339712919, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=27.1028037383178, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1786563, Length=256, Percent_Identity=25, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=23.3766233766234, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=30.6976744186047, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787029, Length=246, Percent_Identity=25.609756097561, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789864, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=21.2765957446809, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1790467, Length=275, Percent_Identity=24, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786319, Length=245, Percent_Identity=24.8979591836735, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=27.8969957081545, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787759, Length=245, Percent_Identity=26.9387755102041, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=257, Percent_Identity=28.7937743190661, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=26.1603375527426, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790739, Length=202, Percent_Identity=24.2574257425743, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=235, Percent_Identity=27.6595744680851, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=24.5283018867925, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=24.5283018867925, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007184, Length=231, Percent_Identity=25.974025974026, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221500365, Length=231, Percent_Identity=25.974025974026, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=24.8826291079812, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=24.8826291079812, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 53640; Mature: 53640

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLTFKHMSKAYNGLPALSDVAISLSGGRVHAVMGENGAGKSTLIKLIAGVVKADGLEV
CCCCCHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
EKDGSAVPLASAQDAQDAGFRFIHQELNIVPQISVAENILLGHRYPRRFGLAVDWPAVKA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHCCCEECCHHHHH
RARDALAFLGADHIDVLSLAGDLPAGDKMLIKIAAALVTDPDKDVQTDLYVLDEPTAALT
HHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHC
GAESEMLFAVIERLTASGAAVLYVSHRMEEVLRICDDVTVLRNGRLVSTNKTRDVTKDQI
CCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCHHHHH
IHDMTGRDVKDAYPPRATGIGRDVVARLDGVATSALSDLTFTLRAGEIIGVAGLSEAGQT
HHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCHH
QLLEIFMGLHPVRAGRVDFQGGPLPRTPARAWASGVAYLPKERRSEGLMLDMSIRANITA
HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCHHHCCCCEEEEEEEEEECCC
PHLGGYGLIAKPRRETDGATAMGGQMRMKYDDIEQAVGQLSGGNQQKVVFARALYGSPRL
CCCCCCCCEECCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLLNEPTRGVDVGAKFDIYSTVRELSGQGCAILLTSSDLPEMLGMCDRILVLQDGRQTHL
EEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCEEEEEECCCHHHH
LDSAALTSAALLSHFYAPDAKA
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQTLTFKHMSKAYNGLPALSDVAISLSGGRVHAVMGENGAGKSTLIKLIAGVVKADGLEV
CCCCCHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
EKDGSAVPLASAQDAQDAGFRFIHQELNIVPQISVAENILLGHRYPRRFGLAVDWPAVKA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHCCCEECCHHHHH
RARDALAFLGADHIDVLSLAGDLPAGDKMLIKIAAALVTDPDKDVQTDLYVLDEPTAALT
HHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHC
GAESEMLFAVIERLTASGAAVLYVSHRMEEVLRICDDVTVLRNGRLVSTNKTRDVTKDQI
CCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCHHHHH
IHDMTGRDVKDAYPPRATGIGRDVVARLDGVATSALSDLTFTLRAGEIIGVAGLSEAGQT
HHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEECCCCCCCHH
QLLEIFMGLHPVRAGRVDFQGGPLPRTPARAWASGVAYLPKERRSEGLMLDMSIRANITA
HHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCHHHCCCCEEEEEEEEEECCC
PHLGGYGLIAKPRRETDGATAMGGQMRMKYDDIEQAVGQLSGGNQQKVVFARALYGSPRL
CCCCCCCCEECCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCEE
LLLNEPTRGVDVGAKFDIYSTVRELSGQGCAILLTSSDLPEMLGMCDRILVLQDGRQTHL
EEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCEEEEEECCCHHHH
LDSAALTSAALLSHFYAPDAKA
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]