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The map label for this gene is rbsC [H]

Identifier: 89054895

GI number: 89054895

Start: 2404422

End: 2405369

Strand: Reverse

Name: rbsC [H]

Synonym: Jann_2404

Alternate gene names: 89054895

Gene position: 2405369-2404422 (Counterclockwise)

Preceding gene: 89054896

Following gene: 89054894

Centisome position: 55.71

GC content: 60.02

Gene sequence:

>948_bases
ATGATCAAAACCCTCCGCCAATCCGGGACGCTTCTGGGCGTCTTTGCGATCATCGCCTTCTTCGCCATCCAGCTGCCCGA
TACGTTCCTGACACCGCGCAACCTGATCAACATCTCGCAGCAATTATCGATGCTGGCCGTTGTTGCCGCGACGATGACCT
TCGTGATGGTGATGGGCGATTTTGATCTGTCGGTCGGCTCCATGGCAAGTCTTGCGGGGATCGTCGCCGCCACGCTGTTC
GCCATGGGATATCCGGTCGGGGCTGGCATTAGCGTGGCCCTTCTGGTGGGCCTTGCGGGGGGGCTGTTCAACGGGTTCCT
CGTCTCGATCATCGGCATCCTGCCGTTCGTGGCAACACTTGGCACGTTGACCGTTTTCAGTGGCCTGGCCTTCCTGATCA
GCGACGGAAGAACCATCTTTGGTCGTGATATTCCGCCCACATTTTCGGGTTTTGCCCGGGGCGGGATCGAGGCGGGCAAC
ATCACGCTTCCCTACCTGACGATCACCGCGGGCATTGTCATTCTCGTGTGCTGGTTCACGCTGGAGCAGACGACGTTCGG
CCGCAGGCTCTATGCCATCGGCGGAAACAAGGAAGCCGCACATCTGGCCGGTATCAAAGTCAAACGCCTGCGCCTGATCG
CGTTTGGACTGACCGGCTTTGGGGCGGCCTGGGCGGGATTGATGTATGCCGCCCGCGTTGCATCGGCGAACCCGACCCAG
GGCAGTGGCTTGATGCTGGATGCCATCGCCGCCGTATTTCTTGGCATGACCATGAGCCGCCAGGGCGAGCCGAGGGTCAT
CTACACGCTCGTGGGCGTCCTGATCCTTGGCATCCTCGACAACGGGCTGACGCAACTTCAGGTGGACAGCTACATCCGCG
AAATTCTGGTGGGCCTGATCGTGATTGCAGCCGTTGCAACGGCCTCAATGTCCAAAAACAGGCGTTAG

Upstream 100 bases:

>100_bases
CTTGCAGGACGGCCGCCAGACGCATCTGCTTGACAGCGCCGCTTTGACCAGCGCAGCACTTCTGTCCCACTTCTATGCCC
CCGATGCGAAAGCCTAGCGT

Downstream 100 bases:

>100_bases
TCCCCGGATCCGTGGGCCATACCTTCTAGCCCGATCATGCCAGGCGAGCATCCGTGCGGGCGGCGTCACTGGGCGGCGGG
TGGGTGAGACGGGGCTGTCG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIKTLRQSGTLLGVFAIIAFFAIQLPDTFLTPRNLINISQQLSMLAVVAATMTFVMVMGDFDLSVGSMASLAGIVAATLF
AMGYPVGAGISVALLVGLAGGLFNGFLVSIIGILPFVATLGTLTVFSGLAFLISDGRTIFGRDIPPTFSGFARGGIEAGN
ITLPYLTITAGIVILVCWFTLEQTTFGRRLYAIGGNKEAAHLAGIKVKRLRLIAFGLTGFGAAWAGLMYAARVASANPTQ
GSGLMLDAIAAVFLGMTMSRQGEPRVIYTLVGVLILGILDNGLTQLQVDSYIREILVGLIVIAAVATASMSKNRR

Sequences:

>Translated_315_residues
MIKTLRQSGTLLGVFAIIAFFAIQLPDTFLTPRNLINISQQLSMLAVVAATMTFVMVMGDFDLSVGSMASLAGIVAATLF
AMGYPVGAGISVALLVGLAGGLFNGFLVSIIGILPFVATLGTLTVFSGLAFLISDGRTIFGRDIPPTFSGFARGGIEAGN
ITLPYLTITAGIVILVCWFTLEQTTFGRRLYAIGGNKEAAHLAGIKVKRLRLIAFGLTGFGAAWAGLMYAARVASANPTQ
GSGLMLDAIAAVFLGMTMSRQGEPRVIYTLVGVLILGILDNGLTQLQVDSYIREILVGLIVIAAVATASMSKNRR
>Mature_315_residues
MIKTLRQSGTLLGVFAIIAFFAIQLPDTFLTPRNLINISQQLSMLAVVAATMTFVMVMGDFDLSVGSMASLAGIVAATLF
AMGYPVGAGISVALLVGLAGGLFNGFLVSIIGILPFVATLGTLTVFSGLAFLISDGRTIFGRDIPPTFSGFARGGIEAGN
ITLPYLTITAGIVILVCWFTLEQTTFGRRLYAIGGNKEAAHLAGIKVKRLRLIAFGLTGFGAAWAGLMYAARVASANPTQ
GSGLMLDAIAAVFLGMTMSRQGEPRVIYTLVGVLILGILDNGLTQLQVDSYIREILVGLIVIAAVATASMSKNRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=36.1563517915309, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=36.2126245847176, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=35.5263157894737, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789992, Length=357, Percent_Identity=31.3725490196078, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=28.6153846153846, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=34.0490797546012, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787793, Length=279, Percent_Identity=30.8243727598566, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082395, Length=317, Percent_Identity=29.0220820189274, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787794, Length=306, Percent_Identity=31.3725490196078, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693214, Length=268, Percent_Identity=30.9701492537313, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33020; Mature: 33020

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTLRQSGTLLGVFAIIAFFAIQLPDTFLTPRNLINISQQLSMLAVVAATMTFVMVMGD
CCCCHHHCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDLSVGSMASLAGIVAATLFAMGYPVGAGISVALLVGLAGGLFNGFLVSIIGILPFVATL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLTVFSGLAFLISDGRTIFGRDIPPTFSGFARGGIEAGNITLPYLTITAGIVILVCWFT
HHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH
LEQTTFGRRLYAIGGNKEAAHLAGIKVKRLRLIAFGLTGFGAAWAGLMYAARVASANPTQ
HHHHHHCCEEEEECCCCCCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
GSGLMLDAIAAVFLGMTMSRQGEPRVIYTLVGVLILGILDNGLTQLQVDSYIREILVGLI
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIAAVATASMSKNRR
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MIKTLRQSGTLLGVFAIIAFFAIQLPDTFLTPRNLINISQQLSMLAVVAATMTFVMVMGD
CCCCHHHCCCHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDLSVGSMASLAGIVAATLFAMGYPVGAGISVALLVGLAGGLFNGFLVSIIGILPFVATL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLTVFSGLAFLISDGRTIFGRDIPPTFSGFARGGIEAGNITLPYLTITAGIVILVCWFT
HHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH
LEQTTFGRRLYAIGGNKEAAHLAGIKVKRLRLIAFGLTGFGAAWAGLMYAARVASANPTQ
HHHHHHCCEEEEECCCCCCHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
GSGLMLDAIAAVFLGMTMSRQGEPRVIYTLVGVLILGILDNGLTQLQVDSYIREILVGLI
CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIAAVATASMSKNRR
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]