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The map label for this gene is yhjK [C]

Identifier: 89054737

GI number: 89054737

Start: 2254129

End: 2255370

Strand: Direct

Name: yhjK [C]

Synonym: Jann_2246

Alternate gene names: 89054737

Gene position: 2254129-2255370 (Clockwise)

Preceding gene: 89054736

Following gene: 89054747

Centisome position: 52.2

GC content: 61.35

Gene sequence:

>1242_bases
ATGTCGCGCCTCGATGTCATCGGCCCACATATGGGGCAACCGGCCGACGTGCCAGATGTGATCACCGATACCATTCGGAC
CATGCGCACCCATCTGGGGATGGAAATCGGGTATCTGTCTGAATTTGTTGGCGATGATCTGGTGTTTCGGGCCGTTGATG
CGCCGGGCCTTGAAGATCTGGCAAAGATCGGCGATGCGCGGTCCAGGTCAGAGACCTACTGCAATCACATCCTGTCCGGG
GCACTGCCCCAATTGATGGCCGACACTTTGGACTACCCCATCGCCGCCGCGCTGCCGATCACCCAGGCCATCCCGATCCG
CGCCCATGTCAGCGTCCCGATTGAACGCTCGGACGGGTCGATCTACGGCATGTTCTGCTGCCTGTCGCCCCAACCCAACA
AGACCCTCAACGACCGCGACCTGCAATTGATGCGCAGCTTCGCGCGCCTGGCGCAGTCGGAGGTGCAGCGTGAGCTGGAG
GGGAAATCCCGTCGGCAGGCCACGCTCGATGTGATCCACAATGTGGTGGAGCAACAAAACTTCAAGATCGTCTATCAGCC
GATTTTCTCGCTTGAGACGGGTGACGTGTCGGGGGTGGAGGCGCTCTGCCGGTTTGAGGCGGAACCGTATCGCCCGCCAA
ACCTCTGGTTCGACGATGCCGCAGGCGTTGGTCTGGGCGAAATGCTGGAGGTTTGCGTGATCGAGGCCGCGATTGCCAAC
CTGCACCTGCTGCCACCGGGGGCGTATCTGTCCCTCAATGCCAGTCCGCAAACGGTTGCGACGGGTCTTCTGGCCCCGAT
CCTGCAGGCCTTTCCGCCGGAGGTTTTGGTCGTGGAAGTGACGGAGCATATCGGCGTGTCCGACTGGGCAACCCTGGACC
GCGAATTGGACAAGTTGCGCGATATGGGGATCCGGATCGCCATCGACGATGCGGGCGCAGGTTATGCGGGCCTGCAACAT
ATGGTGCGGTTGCGGCCCGATATCATCAAACTGGATCGCTCACTGGTGGACCGGGTCGATGAAGATCCCGCGCGCCGGTC
CTTATGCGCGGCGATGGTCCATTACGCGACCGAGACCGGGGCCGCCCTTGTCGCCGAAGGCATTGAACGCAAGGAAGAAG
AGGACGTCCTTCGCAGCCTTGGCGTGCATCTGGGGCAGGGGTTCCTTCTGGCCAAGCCGATGCCTCTGGACGCATTTCTG
GACGCGTATTGCCCGACCAAGTCGCAGGCGCATGTGAATTAA

Upstream 100 bases:

>100_bases
GGGGATCGATGACAAATCTGACAACCGGCTATACGTTCTTTTAAGACTTTTGCGCCATGACTACAGCCGATGGGTTTAGA
CCCCCGAAGGGAGTATCGTC

Downstream 100 bases:

>100_bases
TTCAGCGGGCAATGGCCCGTAAGTGCCGCGCGCGGCCACGGGTGCGTTCACGATAACATGCGTCCCGGTTGGCCCGGGCC
GTGCAAACGACCGCTGGTGG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSRLDVIGPHMGQPADVPDVITDTIRTMRTHLGMEIGYLSEFVGDDLVFRAVDAPGLEDLAKIGDARSRSETYCNHILSG
ALPQLMADTLDYPIAAALPITQAIPIRAHVSVPIERSDGSIYGMFCCLSPQPNKTLNDRDLQLMRSFARLAQSEVQRELE
GKSRRQATLDVIHNVVEQQNFKIVYQPIFSLETGDVSGVEALCRFEAEPYRPPNLWFDDAAGVGLGEMLEVCVIEAAIAN
LHLLPPGAYLSLNASPQTVATGLLAPILQAFPPEVLVVEVTEHIGVSDWATLDRELDKLRDMGIRIAIDDAGAGYAGLQH
MVRLRPDIIKLDRSLVDRVDEDPARRSLCAAMVHYATETGAALVAEGIERKEEEDVLRSLGVHLGQGFLLAKPMPLDAFL
DAYCPTKSQAHVN

Sequences:

>Translated_413_residues
MSRLDVIGPHMGQPADVPDVITDTIRTMRTHLGMEIGYLSEFVGDDLVFRAVDAPGLEDLAKIGDARSRSETYCNHILSG
ALPQLMADTLDYPIAAALPITQAIPIRAHVSVPIERSDGSIYGMFCCLSPQPNKTLNDRDLQLMRSFARLAQSEVQRELE
GKSRRQATLDVIHNVVEQQNFKIVYQPIFSLETGDVSGVEALCRFEAEPYRPPNLWFDDAAGVGLGEMLEVCVIEAAIAN
LHLLPPGAYLSLNASPQTVATGLLAPILQAFPPEVLVVEVTEHIGVSDWATLDRELDKLRDMGIRIAIDDAGAGYAGLQH
MVRLRPDIIKLDRSLVDRVDEDPARRSLCAAMVHYATETGAALVAEGIERKEEEDVLRSLGVHLGQGFLLAKPMPLDAFL
DAYCPTKSQAHVN
>Mature_412_residues
SRLDVIGPHMGQPADVPDVITDTIRTMRTHLGMEIGYLSEFVGDDLVFRAVDAPGLEDLAKIGDARSRSETYCNHILSGA
LPQLMADTLDYPIAAALPITQAIPIRAHVSVPIERSDGSIYGMFCCLSPQPNKTLNDRDLQLMRSFARLAQSEVQRELEG
KSRRQATLDVIHNVVEQQNFKIVYQPIFSLETGDVSGVEALCRFEAEPYRPPNLWFDDAAGVGLGEMLEVCVIEAAIANL
HLLPPGAYLSLNASPQTVATGLLAPILQAFPPEVLVVEVTEHIGVSDWATLDRELDKLRDMGIRIAIDDAGAGYAGLQHM
VRLRPDIIKLDRSLVDRVDEDPARRSLCAAMVHYATETGAALVAEGIERKEEEDVLRSLGVHLGQGFLLAKPMPLDAFLD
AYCPTKSQAHVN

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=269, Percent_Identity=31.2267657992565, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081743, Length=254, Percent_Identity=28.3464566929134, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081921, Length=250, Percent_Identity=28.4, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=28.448275862069, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=31.0483870967742, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788849, Length=274, Percent_Identity=28.1021897810219, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=28.6290322580645, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081845, Length=228, Percent_Identity=30.2631578947368, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082096, Length=257, Percent_Identity=26.0700389105058, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=25.6198347107438, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=312, Percent_Identity=27.5641025641026, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=25.9414225941423, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=32.0261437908497, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 45222; Mature: 45091

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLDVIGPHMGQPADVPDVITDTIRTMRTHLGMEIGYLSEFVGDDLVFRAVDAPGLEDL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHH
AKIGDARSRSETYCNHILSGALPQLMADTLDYPIAAALPITQAIPIRAHVSVPIERSDGS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCEEEEEEEEEECCCCC
IYGMFCCLSPQPNKTLNDRDLQLMRSFARLAQSEVQRELEGKSRRQATLDVIHNVVEQQN
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
FKIVYQPIFSLETGDVSGVEALCRFEAEPYRPPNLWFDDAAGVGLGEMLEVCVIEAAIAN
CEEEEEEHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LHLLPPGAYLSLNASPQTVATGLLAPILQAFPPEVLVVEVTEHIGVSDWATLDRELDKLR
EEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHH
DMGIRIAIDDAGAGYAGLQHMVRLRPDIIKLDRSLVDRVDEDPARRSLCAAMVHYATETG
CCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
AALVAEGIERKEEEDVLRSLGVHLGQGFLLAKPMPLDAFLDAYCPTKSQAHVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SRLDVIGPHMGQPADVPDVITDTIRTMRTHLGMEIGYLSEFVGDDLVFRAVDAPGLEDL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHH
AKIGDARSRSETYCNHILSGALPQLMADTLDYPIAAALPITQAIPIRAHVSVPIERSDGS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCEEEEEEEEEECCCCC
IYGMFCCLSPQPNKTLNDRDLQLMRSFARLAQSEVQRELEGKSRRQATLDVIHNVVEQQN
EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
FKIVYQPIFSLETGDVSGVEALCRFEAEPYRPPNLWFDDAAGVGLGEMLEVCVIEAAIAN
CEEEEEEHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LHLLPPGAYLSLNASPQTVATGLLAPILQAFPPEVLVVEVTEHIGVSDWATLDRELDKLR
EEEECCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHH
DMGIRIAIDDAGAGYAGLQHMVRLRPDIIKLDRSLVDRVDEDPARRSLCAAMVHYATETG
CCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
AALVAEGIERKEEEDVLRSLGVHLGQGFLLAKPMPLDAFLDAYCPTKSQAHVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]