| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054668
Identifier: 89054668
GI number: 89054668
Start: 2185441
End: 2186265
Strand: Direct
Name: 89054668
Synonym: Jann_2177
Alternate gene names: NA
Gene position: 2185441-2186265 (Clockwise)
Preceding gene: 89054667
Following gene: 89054669
Centisome position: 50.61
GC content: 62.67
Gene sequence:
>825_bases ATGCCCGAATTAGCTGAGTTTTTGCCGATGCTGGCGCTGATCCTTGCGATTGGGGCCATGGCCGGCGTTATCGCGGGCCT TCTTGGCGTGGGCGGCGGCATTGTCCTGGTGCCCGCGTTCTTCTTTGCCTTTGAAGGGCTTGGATACAGCACCGATGGGT TGATGCAGATCTGCCTTGCCACGTCGCTGGCCACGATTGTGGTGACGTCGGTCAGGTCCGTCATGGGCCACCACAAGAAG GGGGCGGTGGACTGGGATATCCTGCGCGCCTGGGGGCCGGGCATCGCCATCGGCGCGGCTTTGGGTGTCATCGTGGCCAG TGGCCTCCGCAACGAAGTGTTGATGGCCATTTTCGGTGTTCTGGGTCTTGGCGTGGGCCTTTACATGGCGCTTGGACGGT CTGAGTGGCGGTTGGGCGACCAGATGCCCGGAGCCTTCGGCACCATCGCCTCATCGCCGGTCCTGGGGTTTCTGTCGGTC CTGATGGGGATTGGCGGCGGGTCCTTCGGGGTACCGATGATGACGCTGTTTGGCGTGGCGATCCACCGGGCGGTGGCGAC GGCGGCGGGCTTCGGTGTGATCATCGCGGTGCCTGCGGTCATTGGATTTCTTCTGACGGGCAGTGATGTGGCCAACCGGC CGCCCTATGCTGTGGGCCAGGTCAATATCGTGGCCTTCGTGGCCGTCATCGCGATGACGCTGATCACCACGCCATGGGGC GTGAAGCTGGCCCATGCGATGGACCCCAAACCGCTCAAGCGCGTCTTTGCGGTCTTCATCATGATCATGGCGCTCAACAT GCTGCGCAAGGCCTCTGGTTATTGA
Upstream 100 bases:
>100_bases GAGTAACTGCCCCCATCACCGGTCATCGCGATTATTTGGTCCTGGGCCTTTTGCACAAGGGGCCGCTGGGGTAGCACTCC CTCAACGAATGGGGGGATGC
Downstream 100 bases:
>100_bases GCTGGCTCACGGCCGGGTGGCAGGTTTTCCCGGCTGAGCCTGCCGTTGAGGCCTGGGTCGCGGCGGCGCAGATGCCTGCG TTGACAGCGGCGCAGCAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MPELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKK GAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSV LMGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY
Sequences:
>Translated_274_residues MPELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKK GAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSV LMGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY >Mature_273_residues PELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLATSLATIVVTSVRSVMGHHKKG AVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGVLGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSVL MGIGGGSFGVPMMTLFGVAIHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWGV KLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 28184; Mature: 28053
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH TSLATIVVTSVRSVMGHHKKGAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGV HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSVLMGIGGGSFGVPMMTLFGVA HHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH IHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PELAEFLPMLALILAIGAMAGVIAGLLGVGGGIVLVPAFFFAFEGLGYSTDGLMQICLA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH TSLATIVVTSVRSVMGHHKKGAVDWDILRAWGPGIAIGAALGVIVASGLRNEVLMAIFGV HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LGLGVGLYMALGRSEWRLGDQMPGAFGTIASSPVLGFLSVLMGIGGGSFGVPMMTLFGVA HHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH IHRAVATAAGFGVIIAVPAVIGFLLTGSDVANRPPYAVGQVNIVAFVAVIAMTLITTPWG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC VKLAHAMDPKPLKRVFAVFIMIMALNMLRKASGY CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]