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The map label for this gene is ycaD [C]

Identifier: 89054209

GI number: 89054209

Start: 1702126

End: 1703415

Strand: Direct

Name: ycaD [C]

Synonym: Jann_1718

Alternate gene names: 89054209

Gene position: 1702126-1703415 (Clockwise)

Preceding gene: 89054208

Following gene: 89054210

Centisome position: 39.42

GC content: 61.09

Gene sequence:

>1290_bases
ATGATTACCGTTATCCGCAGCGCCTGGGCGCTTCTTCTGGGCATGTTCCTTTTGCAGATCGGCAACGGTTTGCAGGGCTC
TCTCATGGGCGTGCGGGGTGCCATTGAAGGCTTCACCACGTTTGAGTTGTCGCTGATCGGATCGGCCTATTTTATTGGGT
TTCTGGGGGGGTCGTCCCTTGCGCCGAAGTTCATCGCGCGGGTGGGGCACGTTCGCGTTTTCGCCGCTCTGGGCTCGTTC
ATCTCGGCCATCGTGATCTCTTACCCCATCGTCACCGACCCCTATGCCTGGATGCTGTTGCGGGTGGGCATCGGTTTTTC
CCTCTCCGGCGTCTATGTGACCGCTGAGTCGTGGCTCAACAATTCGGCCACGAACGAGACGCGGGGCCAGTCGCTTTCGG
CCTATATGCTGATGCAGATGTTCGGCCTTGTGGCGGCGCAGGGCATTCTGGCGGTGGGCGACCCGTCGGGCTGGATCCTG
TTTGTCATCCCGTCCATCCTGGTGTCGCTGTCCTTTGCGCCGATCCTTTTGTCGGCCACGCCGACGCCTGCGATTGAGGA
AACGCGGTCAATGTCGCTGCGCCAACTCTATGACGCGTCGCCCTTCGCCTCGATCTCCATGTTGTTGATGGGGAGCGTTT
TTGCGGGCCAGTTCGCCATGTCCGCGGTCTACGCAACTGAGGCCGGGCTGACCGTCCCGCAACTCTCGGCGTTTGTGTCC
GCGATCTTCGTGGGGGCCATCGTGCTGCAATACCCCATTGGCTGGTTTTCCGACCGGATGGACCGCCGCATTCTGATCGT
AGGGGCCTCGGCGCTCGGGTCCGTGGTGGCCATCGTGGGCATGATTTTTGGGCACAGTTTCAGCGTGCTTCTGGTGGTCG
CGGCGCTGTCGGGCGGGTTGGCGCAACCGCTTTATGCGTTGATCATTGCCTATATCAACGACTATCTGGACCCCGCCGAT
ATGGCCGCCGCGTCGGGGGGGATGATCTTCGTGAACGGCATCGGCGCGATCTCTGGCCCGCCGCTGATGGGCCTTCTGAT
GGGCTATTTCGGGGCGGCTGGCTTCTGGCTGTTTCTGGCGGTTATTCTGGCGATCATGGCCGCCTATGGGTTGTTCCGCA
TGACCCAGAGCATATCTCCCTACAAGGAAGAGGACGACTACATGGCCGTCCCCTACGCCAACCTCATGCCCGGCACCGCA
TCGCCTGTGGCGGTTGAGGCTGCGCAGGAGTATTATGCAGAAACCGCCGAAGAAATGGCGAGCGAGACAGAGGATGAGCC
CCGCCCATGA

Upstream 100 bases:

>100_bases
TTTGCTCTTTCCGTCGCAAAAGGGCCAGACGTCGCGGTGATTTCCGGGCAGGTCTCGGATCAGCACCTGATACGCCAACC
CGCACGCATGTGAGGTCCCC

Downstream 100 bases:

>100_bases
CCACTTCTCCCACAAATGAGATTGCCAGCGACGTTGTCGCGTTCTGGGTCGGGGCCGGGCCGCAGAAGTGGTACGTGCAG
GATGACGCGTTCGACCAGGA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MITVIRSAWALLLGMFLLQIGNGLQGSLMGVRGAIEGFTTFELSLIGSAYFIGFLGGSSLAPKFIARVGHVRVFAALGSF
ISAIVISYPIVTDPYAWMLLRVGIGFSLSGVYVTAESWLNNSATNETRGQSLSAYMLMQMFGLVAAQGILAVGDPSGWIL
FVIPSILVSLSFAPILLSATPTPAIEETRSMSLRQLYDASPFASISMLLMGSVFAGQFAMSAVYATEAGLTVPQLSAFVS
AIFVGAIVLQYPIGWFSDRMDRRILIVGASALGSVVAIVGMIFGHSFSVLLVVAALSGGLAQPLYALIIAYINDYLDPAD
MAAASGGMIFVNGIGAISGPPLMGLLMGYFGAAGFWLFLAVILAIMAAYGLFRMTQSISPYKEEDDYMAVPYANLMPGTA
SPVAVEAAQEYYAETAEEMASETEDEPRP

Sequences:

>Translated_429_residues
MITVIRSAWALLLGMFLLQIGNGLQGSLMGVRGAIEGFTTFELSLIGSAYFIGFLGGSSLAPKFIARVGHVRVFAALGSF
ISAIVISYPIVTDPYAWMLLRVGIGFSLSGVYVTAESWLNNSATNETRGQSLSAYMLMQMFGLVAAQGILAVGDPSGWIL
FVIPSILVSLSFAPILLSATPTPAIEETRSMSLRQLYDASPFASISMLLMGSVFAGQFAMSAVYATEAGLTVPQLSAFVS
AIFVGAIVLQYPIGWFSDRMDRRILIVGASALGSVVAIVGMIFGHSFSVLLVVAALSGGLAQPLYALIIAYINDYLDPAD
MAAASGGMIFVNGIGAISGPPLMGLLMGYFGAAGFWLFLAVILAIMAAYGLFRMTQSISPYKEEDDYMAVPYANLMPGTA
SPVAVEAAQEYYAETAEEMASETEDEPRP
>Mature_429_residues
MITVIRSAWALLLGMFLLQIGNGLQGSLMGVRGAIEGFTTFELSLIGSAYFIGFLGGSSLAPKFIARVGHVRVFAALGSF
ISAIVISYPIVTDPYAWMLLRVGIGFSLSGVYVTAESWLNNSATNETRGQSLSAYMLMQMFGLVAAQGILAVGDPSGWIL
FVIPSILVSLSFAPILLSATPTPAIEETRSMSLRQLYDASPFASISMLLMGSVFAGQFAMSAVYATEAGLTVPQLSAFVS
AIFVGAIVLQYPIGWFSDRMDRRILIVGASALGSVVAIVGMIFGHSFSVLLVVAALSGGLAQPLYALIIAYINDYLDPAD
MAAASGGMIFVNGIGAISGPPLMGLLMGYFGAAGFWLFLAVILAIMAAYGLFRMTQSISPYKEEDDYMAVPYANLMPGTA
SPVAVEAAQEYYAETAEEMASETEDEPRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=327, Percent_Identity=24.4648318042813, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45407; Mature: 45407

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVIRSAWALLLGMFLLQIGNGLQGSLMGVRGAIEGFTTFELSLIGSAYFIGFLGGSSL
CEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
APKFIARVGHVRVFAALGSFISAIVISYPIVTDPYAWMLLRVGIGFSLSGVYVTAESWLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECEEEEEHHHHCC
NSATNETRGQSLSAYMLMQMFGLVAAQGILAVGDPSGWILFVIPSILVSLSFAPILLSAT
CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHEEECC
PTPAIEETRSMSLRQLYDASPFASISMLLMGSVFAGQFAMSAVYATEAGLTVPQLSAFVS
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AIFVGAIVLQYPIGWFSDRMDRRILIVGASALGSVVAIVGMIFGHSFSVLLVVAALSGGL
HHHHHHHHHHHCCCHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCH
AQPLYALIIAYINDYLDPADMAAASGGMIFVNGIGAISGPPLMGLLMGYFGAAGFWLFLA
HHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VILAIMAAYGLFRMTQSISPYKEEDDYMAVPYANLMPGTASPVAVEAAQEYYAETAEEMA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHHHH
SETEDEPRP
HCCCCCCCC
>Mature Secondary Structure
MITVIRSAWALLLGMFLLQIGNGLQGSLMGVRGAIEGFTTFELSLIGSAYFIGFLGGSSL
CEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
APKFIARVGHVRVFAALGSFISAIVISYPIVTDPYAWMLLRVGIGFSLSGVYVTAESWLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEECEEEEEHHHHCC
NSATNETRGQSLSAYMLMQMFGLVAAQGILAVGDPSGWILFVIPSILVSLSFAPILLSAT
CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHHHHHHHEEECC
PTPAIEETRSMSLRQLYDASPFASISMLLMGSVFAGQFAMSAVYATEAGLTVPQLSAFVS
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AIFVGAIVLQYPIGWFSDRMDRRILIVGASALGSVVAIVGMIFGHSFSVLLVVAALSGGL
HHHHHHHHHHHCCCHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCH
AQPLYALIIAYINDYLDPADMAAASGGMIFVNGIGAISGPPLMGLLMGYFGAAGFWLFLA
HHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VILAIMAAYGLFRMTQSISPYKEEDDYMAVPYANLMPGTASPVAVEAAQEYYAETAEEMA
HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHHHH
SETEDEPRP
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]