| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054173
Identifier: 89054173
GI number: 89054173
Start: 1665432
End: 1665914
Strand: Reverse
Name: 89054173
Synonym: Jann_1682
Alternate gene names: NA
Gene position: 1665914-1665432 (Counterclockwise)
Preceding gene: 89054178
Following gene: 89054168
Centisome position: 38.58
GC content: 64.18
Gene sequence:
>483_bases ATGACCAAACGCACCCCCGCCGTGCGACCGTTCTACCCCGTCGTGATCGCGGCTGCGACCGTGATTTTCGTCCAGCCTGT CCTGGCCCAGATGTCGCTGGACCCGGCCTGCATCTACCAGGAAGGCTCGCAGGCCTCCTGCACCCACGCGGTGGCCTGCA TCGGCGGCGACACGTTGTTTGTGGGCGGCACTGTCGGCTGGGATGAGGGCGTCCTGACCGGCGATCTGTCGAATGGAGCC AGCTGCACCGGCATTTGGAACAACGCCAATCAGCTGGTCAACTTCACCTGCGACGACGGCCAGACAGGCATCGTGCGCTA CACTCTGTTTGACGGATCGACCGGCACGGCCATCGGCGCGGGCGAGACGATTGCAGGTCGCCCGATCGAGGCGTGGTCAG GGCAGAACATCGTGGATTTCGTGGAGCGTGAGACGGGCCGCGTCACCCTGCAATGCGGTGTGGAAGAATTGCTGCTGGGT TAG
Upstream 100 bases:
>100_bases GATGCCCTTTGCCGAATGCCATGATGAGACTCCCCTTCGCCCGACCGCTTCGTTCCTTAAGGGCAAACTCACCCGCCCTA TCGCTGCGCTACGTGAGGGC
Downstream 100 bases:
>100_bases CCCGACAGGCCCGCGCGCCACAGCGACAGGCGCACAGCGTAAGGCGTGGGGGTCCAGGTGCCCATTGGCACGCCGGAGGC CCGCAAGACCCGCCCCACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MTKRTPAVRPFYPVVIAAATVIFVQPVLAQMSLDPACIYQEGSQASCTHAVACIGGDTLFVGGTVGWDEGVLTGDLSNGA SCTGIWNNANQLVNFTCDDGQTGIVRYTLFDGSTGTAIGAGETIAGRPIEAWSGQNIVDFVERETGRVTLQCGVEELLLG
Sequences:
>Translated_160_residues MTKRTPAVRPFYPVVIAAATVIFVQPVLAQMSLDPACIYQEGSQASCTHAVACIGGDTLFVGGTVGWDEGVLTGDLSNGA SCTGIWNNANQLVNFTCDDGQTGIVRYTLFDGSTGTAIGAGETIAGRPIEAWSGQNIVDFVERETGRVTLQCGVEELLLG >Mature_159_residues TKRTPAVRPFYPVVIAAATVIFVQPVLAQMSLDPACIYQEGSQASCTHAVACIGGDTLFVGGTVGWDEGVLTGDLSNGAS CTGIWNNANQLVNFTCDDGQTGIVRYTLFDGSTGTAIGAGETIAGRPIEAWSGQNIVDFVERETGRVTLQCGVEELLLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16733; Mature: 16602
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRTPAVRPFYPVVIAAATVIFVQPVLAQMSLDPACIYQEGSQASCTHAVACIGGDTLF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCEEE VGGTVGWDEGVLTGDLSNGASCTGIWNNANQLVNFTCDDGQTGIVRYTLFDGSTGTAIGA ECCCCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCEECC GETIAGRPIEAWSGQNIVDFVERETGRVTLQCGVEELLLG CCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHCC >Mature Secondary Structure TKRTPAVRPFYPVVIAAATVIFVQPVLAQMSLDPACIYQEGSQASCTHAVACIGGDTLF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCEEE VGGTVGWDEGVLTGDLSNGASCTGIWNNANQLVNFTCDDGQTGIVRYTLFDGSTGTAIGA ECCCCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCEECC GETIAGRPIEAWSGQNIVDFVERETGRVTLQCGVEELLLG CCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA