| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054123
Identifier: 89054123
GI number: 89054123
Start: 1620105
End: 1621265
Strand: Direct
Name: 89054123
Synonym: Jann_1632
Alternate gene names: NA
Gene position: 1620105-1621265 (Clockwise)
Preceding gene: 89054122
Following gene: 89054124
Centisome position: 37.52
GC content: 64.08
Gene sequence:
>1161_bases ATGGTATTGGATTTCCTAAAGAAATCTACACCCGCTGCACCGGAAGCCAAGGCATCCGCTAGTGCGAAGCTGGCGGTCTG GGGATCGTCGGGCCGCGTGGTGTGGAGCCCCCGTGACGTGGGCTCTTTGACGAAGAACGGGTTTCTGGGCAACCCGGTGG GCTTTCGCGCCGTCAAGGTGATTGCCGAGGCCGCCGCGGCCCTGCCGGTGATCTGCCGAGATGCGGAGCGCCGGTTTGAG GTTCACCCGGTTCTGTCGCTTCTCAACCGCCCCAACGCTGGTCAGACCCGCGCGGATCTGCTGGAAGCGGCCTTCGCGCA ATTGATGCTGTCTGGCAATGCCTACGTCGAGGCCTTGATGCCGGAAGAGGGCTATCCGGCGGAGTTGCACGTGCTTCGGT CGGATCGGATGAGCCTGATCCCCGGTGCGGATGGGTGGCCGAAAGCCTACGACTACACGGTCGGCGCGCGCAGCCACCGC TACCCGGCGGAACTGATCTGCCACATCCGCAACTTCCACCCGCAAGATGACCACCACGGACTTGCACCGATCCAGGCGGC AGCGACCGCGATTGACGTCCATAATTCCGCCGCGCGGTGGTCCAAGGCGCTGCTGGACAATGCCGCTCGGCCATCAGGAG CCATTGTTTACAACGGCTTGGAGGGTGCTGGTACGATGAGTCAGGACCAGTTCGACCGCCTGCAGATGGAGCTGGAAAGC CACCACCAGGGCGCACGGAACGCGGGCCGTCCGATGTTGTTGGAAGGCGGGTTGGACTGGAAACCGATGGGGTTCAGCCC ATCCGACATGGAATTCCAGAAGACCAAAGACGCCGCAGCGCGGGATATTGCGCTGGCGTTCGGTGTGCCGCCGATGCTTC TGGGCATCCCCGGTGACGCGACCTACGCCAATTATGCGGAGGCCAATCGGGCGTTCTATCGCCTGACGGTTCTGCCCTTG GCCGAGCGCGTCTGGTCATCGATGTCGCACTGGCTCTCGGGCCTTGCAGGCGACTTGGTGGAGGTCAAGCCGGACCTTGA CGGCGTGCCCGCGCTGGCCGCCGAGCGCGAGGCACAATGGCGCCGCGTCAGTGAAGCGACGTTCCTGACAGACGTGGAGA AGCGACGACTGCTGGGGCTGCCGGAGCAGCCCGAGACATGA
Upstream 100 bases:
>100_bases GAAACCTTTGACACGAATGAAACGGGCCGCGTCGGGCGGCTATGGAGCGGGAGGCGATAGGCCTACCTGCTCTTCATGTA TGACTTGAGGAGAGGCTCAC
Downstream 100 bases:
>100_bases GCGAGCCGCGCGGCGGCGGCGGCTCTCGCTACCTCTACGCGCCATTCGACGCTGCCAACGCGCAGATCGAAGCCAACGAG CGTGTGCAGCAGGAGCGCTG
Product: Phage portal protein, HK97
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MVLDFLKKSTPAAPEAKASASAKLAVWGSSGRVVWSPRDVGSLTKNGFLGNPVGFRAVKVIAEAAAALPVICRDAERRFE VHPVLSLLNRPNAGQTRADLLEAAFAQLMLSGNAYVEALMPEEGYPAELHVLRSDRMSLIPGADGWPKAYDYTVGARSHR YPAELICHIRNFHPQDDHHGLAPIQAAATAIDVHNSAARWSKALLDNAARPSGAIVYNGLEGAGTMSQDQFDRLQMELES HHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKDAAARDIALAFGVPPMLLGIPGDATYANYAEANRAFYRLTVLPL AERVWSSMSHWLSGLAGDLVEVKPDLDGVPALAAEREAQWRRVSEATFLTDVEKRRLLGLPEQPET
Sequences:
>Translated_386_residues MVLDFLKKSTPAAPEAKASASAKLAVWGSSGRVVWSPRDVGSLTKNGFLGNPVGFRAVKVIAEAAAALPVICRDAERRFE VHPVLSLLNRPNAGQTRADLLEAAFAQLMLSGNAYVEALMPEEGYPAELHVLRSDRMSLIPGADGWPKAYDYTVGARSHR YPAELICHIRNFHPQDDHHGLAPIQAAATAIDVHNSAARWSKALLDNAARPSGAIVYNGLEGAGTMSQDQFDRLQMELES HHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKDAAARDIALAFGVPPMLLGIPGDATYANYAEANRAFYRLTVLPL AERVWSSMSHWLSGLAGDLVEVKPDLDGVPALAAEREAQWRRVSEATFLTDVEKRRLLGLPEQPET >Mature_386_residues MVLDFLKKSTPAAPEAKASASAKLAVWGSSGRVVWSPRDVGSLTKNGFLGNPVGFRAVKVIAEAAAALPVICRDAERRFE VHPVLSLLNRPNAGQTRADLLEAAFAQLMLSGNAYVEALMPEEGYPAELHVLRSDRMSLIPGADGWPKAYDYTVGARSHR YPAELICHIRNFHPQDDHHGLAPIQAAATAIDVHNSAARWSKALLDNAARPSGAIVYNGLEGAGTMSQDQFDRLQMELES HHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKDAAARDIALAFGVPPMLLGIPGDATYANYAEANRAFYRLTVLPL AERVWSSMSHWLSGLAGDLVEVKPDLDGVPALAAEREAQWRRVSEATFLTDVEKRRLLGLPEQPET
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 41991; Mature: 41991
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLDFLKKSTPAAPEAKASASAKLAVWGSSGRVVWSPRDVGSLTKNGFLGNPVGFRAVKV CCCHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHH IAEAAAALPVICRDAERRFEVHPVLSLLNRPNAGQTRADLLEAAFAQLMLSGNAYVEALM HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC PEEGYPAELHVLRSDRMSLIPGADGWPKAYDYTVGARSHRYPAELICHIRNFHPQDDHHG CCCCCCCEEEEEECCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCC LAPIQAAATAIDVHNSAARWSKALLDNAARPSGAIVYNGLEGAGTMSQDQFDRLQMELES CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH HHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKDAAARDIALAFGVPPMLLGIPGDA HHCCHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TYANYAEANRAFYRLTVLPLAERVWSSMSHWLSGLAGDLVEVKPDLDGVPALAAEREAQW CCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHH RRVSEATFLTDVEKRRLLGLPEQPET HHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVLDFLKKSTPAAPEAKASASAKLAVWGSSGRVVWSPRDVGSLTKNGFLGNPVGFRAVKV CCCHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHH IAEAAAALPVICRDAERRFEVHPVLSLLNRPNAGQTRADLLEAAFAQLMLSGNAYVEALM HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC PEEGYPAELHVLRSDRMSLIPGADGWPKAYDYTVGARSHRYPAELICHIRNFHPQDDHHG CCCCCCCEEEEEECCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCC LAPIQAAATAIDVHNSAARWSKALLDNAARPSGAIVYNGLEGAGTMSQDQFDRLQMELES CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH HHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKDAAARDIALAFGVPPMLLGIPGDA HHCCHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TYANYAEANRAFYRLTVLPLAERVWSSMSHWLSGLAGDLVEVKPDLDGVPALAAEREAQW CCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHH RRVSEATFLTDVEKRRLLGLPEQPET HHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA