| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89054119
Identifier: 89054119
GI number: 89054119
Start: 1614273
End: 1615304
Strand: Reverse
Name: 89054119
Synonym: Jann_1628
Alternate gene names: NA
Gene position: 1615304-1614273 (Counterclockwise)
Preceding gene: 89054140
Following gene: 89054113
Centisome position: 37.41
GC content: 63.47
Gene sequence:
>1032_bases ATGTTACGTTGTGTTTTCACCTCTGTTTTTGCCTCTCTCGTGGCGGGCCTTGCGCTGGCCACGCCCGCCCATGCGCAATG TGAGGACCTGTCGTCCCTCCAGAATGTGGTTGAATTGGTCTCCGCGACACGCGCGGCGCGTGACACAGCTCAACTCACGC GGCTTGGCCACGATCTCGACGCCGCGTTGGACCGCCTGGACACCGCCCAACTGACGCCGATCCTTCAGGCCGAGTACCAG TTCACCGTTACAGGCTGGATCGAACGGACGTTGCACACATTAGATCAGGTCGCTCAGGCCGCGCAGGCAGGCGACATCGA GACGGCCCAGACCCTCGCCCAGGGCACCCGCGTCTCGGTCGGCGTGTCGCGCTTCCAACTGACCTCTGCCCCATCCCGGT GCGTGTCCCTTGATCCGCAGCAAACGTCAGATGGCCGCACGTCGACCGTTTCCGAGTTTGAAACCGCCAGTTTCACATCC CCCATTGATGCGATCATAAATAATGCCGTCTCCCCGGACCTGGCCGCCGCGCGGATGATGGCTGATGCACGCCGGTCCTC CGCTCCCGCACGCGGTCTGCTCCTGATCCCGCCCTTGCTCCTCTGCGTGGGTCTGCTTATCTGGGCGTTGCGCTCGAAGA TGAGCAAAGCGCTGTGGCTCGCCAATCAACGCAAAATGCCGCGCCACGCCTGTGCCTATGTCACATCGGTGCGCAAAATG CCGGGGACGGGGATCAACCGCGTCCTGGATCAGGCCGACGGCACCGCGCAGGGGGCGCTTGCCTCACGGATCCTTGACAT CAACCGCTTTGGTGTGGCCATCGCCCAGCCCGAGTCCCCCATCACCGACGGCTCTGTCGAGTTCCAGATCGAGGACACGT GGGTTCTGGGTCAGATCCGGTGGAGCAATCAATCGTGTTTCGGCGTTCAGACCATGACCCCCATCGACGAAGATCTCGTG GCCACCGTTGTGGCGTCCCGCGCGCCGCAGCCGTCCAGCGCGACCGGCAAAGGCGGGCTCGCATTGTCCTGA
Upstream 100 bases:
>100_bases GACGCGTTCGGGTCGTATTTTCCTAAAACTCAAGAGTGTCGCCGAAAAGCTGCCCCACCGCGGGGCATCTTCAGACACAG CCGCACCTTAGACCATTCTT
Downstream 100 bases:
>100_bases CAGCGCTGGGTCTGCGGGACGGCGGGAGGGGCGAAGTTCACGGTTTTGCCAGGCAAAATCGTGGACCAGCGTCTCCCCGT CCCGCAACAGAAAACGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MLRCVFTSVFASLVAGLALATPAHAQCEDLSSLQNVVELVSATRAARDTAQLTRLGHDLDAALDRLDTAQLTPILQAEYQ FTVTGWIERTLHTLDQVAQAAQAGDIETAQTLAQGTRVSVGVSRFQLTSAPSRCVSLDPQQTSDGRTSTVSEFETASFTS PIDAIINNAVSPDLAAARMMADARRSSAPARGLLLIPPLLLCVGLLIWALRSKMSKALWLANQRKMPRHACAYVTSVRKM PGTGINRVLDQADGTAQGALASRILDINRFGVAIAQPESPITDGSVEFQIEDTWVLGQIRWSNQSCFGVQTMTPIDEDLV ATVVASRAPQPSSATGKGGLALS
Sequences:
>Translated_343_residues MLRCVFTSVFASLVAGLALATPAHAQCEDLSSLQNVVELVSATRAARDTAQLTRLGHDLDAALDRLDTAQLTPILQAEYQ FTVTGWIERTLHTLDQVAQAAQAGDIETAQTLAQGTRVSVGVSRFQLTSAPSRCVSLDPQQTSDGRTSTVSEFETASFTS PIDAIINNAVSPDLAAARMMADARRSSAPARGLLLIPPLLLCVGLLIWALRSKMSKALWLANQRKMPRHACAYVTSVRKM PGTGINRVLDQADGTAQGALASRILDINRFGVAIAQPESPITDGSVEFQIEDTWVLGQIRWSNQSCFGVQTMTPIDEDLV ATVVASRAPQPSSATGKGGLALS >Mature_343_residues MLRCVFTSVFASLVAGLALATPAHAQCEDLSSLQNVVELVSATRAARDTAQLTRLGHDLDAALDRLDTAQLTPILQAEYQ FTVTGWIERTLHTLDQVAQAAQAGDIETAQTLAQGTRVSVGVSRFQLTSAPSRCVSLDPQQTSDGRTSTVSEFETASFTS PIDAIINNAVSPDLAAARMMADARRSSAPARGLLLIPPLLLCVGLLIWALRSKMSKALWLANQRKMPRHACAYVTSVRKM PGTGINRVLDQADGTAQGALASRILDINRFGVAIAQPESPITDGSVEFQIEDTWVLGQIRWSNQSCFGVQTMTPIDEDLV ATVVASRAPQPSSATGKGGLALS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36556; Mature: 36556
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRCVFTSVFASLVAGLALATPAHAQCEDLSSLQNVVELVSATRAARDTAQLTRLGHDLD CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AALDRLDTAQLTPILQAEYQFTVTGWIERTLHTLDQVAQAAQAGDIETAQTLAQGTRVSV HHHHHHHHHHCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE GVSRFQLTSAPSRCVSLDPQQTSDGRTSTVSEFETASFTSPIDAIINNAVSPDLAAARMM CHHHEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH ADARRSSAPARGLLLIPPLLLCVGLLIWALRSKMSKALWLANQRKMPRHACAYVTSVRKM HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC PGTGINRVLDQADGTAQGALASRILDINRFGVAIAQPESPITDGSVEFQIEDTWVLGQIR CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEEEECEEEEEEEE WSNQSCFGVQTMTPIDEDLVATVVASRAPQPSSATGKGGLALS ECCCCEECEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLRCVFTSVFASLVAGLALATPAHAQCEDLSSLQNVVELVSATRAARDTAQLTRLGHDLD CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AALDRLDTAQLTPILQAEYQFTVTGWIERTLHTLDQVAQAAQAGDIETAQTLAQGTRVSV HHHHHHHHHHCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEE GVSRFQLTSAPSRCVSLDPQQTSDGRTSTVSEFETASFTSPIDAIINNAVSPDLAAARMM CHHHEEECCCCCHHEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH ADARRSSAPARGLLLIPPLLLCVGLLIWALRSKMSKALWLANQRKMPRHACAYVTSVRKM HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC PGTGINRVLDQADGTAQGALASRILDINRFGVAIAQPESPITDGSVEFQIEDTWVLGQIR CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEEEECEEEEEEEE WSNQSCFGVQTMTPIDEDLVATVVASRAPQPSSATGKGGLALS ECCCCEECEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA