| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is imuB [H]
Identifier: 89054050
GI number: 89054050
Start: 1534062
End: 1535495
Strand: Reverse
Name: imuB [H]
Synonym: Jann_1559
Alternate gene names: 89054050
Gene position: 1535495-1534062 (Counterclockwise)
Preceding gene: 89054051
Following gene: 89054049
Centisome position: 35.56
GC content: 62.62
Gene sequence:
>1434_bases ATGCCCCTTGTGCTGGTGCGTGAAGGGCATCATGGGCCGGTCGTTCATGCGGCGAACCGTGCCGCGCGGTTGGGAGGGAT CAATCCCGGCGCACGCCTTGTGGATATGCGCGCCATTTGTCCCGAACTGCATGTGGAATATGCCGATATCATGGGCGACC GGGCTGCATTGGACCGACTTGTCCTTTGGGCGCGGCGCTGGTGCCCCTGGACGGTGCGCGATGGGGAAGACGGGCTGATC CTCGACACCACTGGTTCAGATCATCTTCTGGGCGGCGAAGCGGCGATGCTGACGACAATGGAGACGCAATTATCCCTGCT GGGGATCAGCGCCCGACTGGCCGTTGCGCCAACATGGGGGGCGGCATGGGCCCTGGCGCGCTTTGGCCCGGTCAGGTCCG TTTGTGCCGCGGATGAGGTGGACATCAAACTAGGGGCCCTGCCCGTCACCGGGTTGCGGTTGGAGAATGACACCGTCGTT CTGTTACGCCGCCTGGGTCTGAAAACCATCGGCGCGCTCATGGATGTGCCCCGGTTGTCGCTGGCCAGAAGGTTTGTGAA AGCGGCCCTTGAGGCAAACCCGCTGATGCGTCTTGATCAGGCGTTGGGGAAATTGGCGGAACCTGTTGCCAGCGTGGGCG CCTCTCCGCGTTTGCGGGTGCAAAGCAGCCTGGCCGAGCCGATTTTTGATCCGACCCCATATCTGCCGGGCTTGTGTGAA GATCTATGTGAGGCCCTCAAACAGGCTGGGCAAGGCTGTCGCCGCCTGGGTCTGACCGTGTATCACACCGATGGGGATGT CAGCCATGTGAGCGTCGCAACCTCCGCCACGACGCGCGATCCAAACCACCTGCATGGCCTGTTCCGGGACAAGGTGGAGC GGATCAACCCCGGGTTTGGCTTTGACCTGATCACGCTTGAGGCGGGCGGCGTGGAAGATATGCAGGACCGCCAGAACCGG TTGGATGGTGCGGCGGATGATGATCTGCATCTGACACAATTGGTGGACCGGTTAAGCGCCAGGTTTGGGGCGCGCGCCAT CACACGCCCTGTCTTGCGGGCCAGCCATATCCCCGAACGGGCCGAAAGGCATATGGCTGCGGACGCAATGCTGGCCGAAC CCGAAACAGCGCCCCTGAAAGAGCGGCCCTTGCGGTTGTTCGATCACCCCGAAGAAGTCCGCGTTCTTTATGCCGTGCCG GAAGGCCCGCCCGCGCAATTTGTCTGGCGCAGACAAACCCACCGCGTGATGCGCTATTCCGGCCCTGAACGGATCGCCCC TGAATGGTGGAAAGATCGCCCCGGCACCCGGTTGCGCGATTATTTCAAGGTCGAAAATCACGCGGGGCAGCGCATCTGGC TTTATCGGGAAGGGTTGCACGAGGATGGGCGCGGCGGCGATCCGCGCTGGTTCGTGCATGGGTGTTTCGCGTGA
Upstream 100 bases:
>100_bases TATGACGGGGCGTCGGATCGTCTCGATCTCTCTGCCGCAGTTCGCGATGGAACGCTGGCACCGGGTGATGGAGCGGCACG GCAACGCGCCACCGGATGAC
Downstream 100 bases:
>100_bases TGGAGAGGGAAGAGGTCCATGCCTGAAATGGACAACCAGCGCCCAAGGCGCACCATCGAGGAGGGTGGCTTCAAACCGAA CCCGAAGGCCGATTATGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MPLVLVREGHHGPVVHAANRAARLGGINPGARLVDMRAICPELHVEYADIMGDRAALDRLVLWARRWCPWTVRDGEDGLI LDTTGSDHLLGGEAAMLTTMETQLSLLGISARLAVAPTWGAAWALARFGPVRSVCAADEVDIKLGALPVTGLRLENDTVV LLRRLGLKTIGALMDVPRLSLARRFVKAALEANPLMRLDQALGKLAEPVASVGASPRLRVQSSLAEPIFDPTPYLPGLCE DLCEALKQAGQGCRRLGLTVYHTDGDVSHVSVATSATTRDPNHLHGLFRDKVERINPGFGFDLITLEAGGVEDMQDRQNR LDGAADDDLHLTQLVDRLSARFGARAITRPVLRASHIPERAERHMAADAMLAEPETAPLKERPLRLFDHPEEVRVLYAVP EGPPAQFVWRRQTHRVMRYSGPERIAPEWWKDRPGTRLRDYFKVENHAGQRIWLYREGLHEDGRGGDPRWFVHGCFA
Sequences:
>Translated_477_residues MPLVLVREGHHGPVVHAANRAARLGGINPGARLVDMRAICPELHVEYADIMGDRAALDRLVLWARRWCPWTVRDGEDGLI LDTTGSDHLLGGEAAMLTTMETQLSLLGISARLAVAPTWGAAWALARFGPVRSVCAADEVDIKLGALPVTGLRLENDTVV LLRRLGLKTIGALMDVPRLSLARRFVKAALEANPLMRLDQALGKLAEPVASVGASPRLRVQSSLAEPIFDPTPYLPGLCE DLCEALKQAGQGCRRLGLTVYHTDGDVSHVSVATSATTRDPNHLHGLFRDKVERINPGFGFDLITLEAGGVEDMQDRQNR LDGAADDDLHLTQLVDRLSARFGARAITRPVLRASHIPERAERHMAADAMLAEPETAPLKERPLRLFDHPEEVRVLYAVP EGPPAQFVWRRQTHRVMRYSGPERIAPEWWKDRPGTRLRDYFKVENHAGQRIWLYREGLHEDGRGGDPRWFVHGCFA >Mature_476_residues PLVLVREGHHGPVVHAANRAARLGGINPGARLVDMRAICPELHVEYADIMGDRAALDRLVLWARRWCPWTVRDGEDGLIL DTTGSDHLLGGEAAMLTTMETQLSLLGISARLAVAPTWGAAWALARFGPVRSVCAADEVDIKLGALPVTGLRLENDTVVL LRRLGLKTIGALMDVPRLSLARRFVKAALEANPLMRLDQALGKLAEPVASVGASPRLRVQSSLAEPIFDPTPYLPGLCED LCEALKQAGQGCRRLGLTVYHTDGDVSHVSVATSATTRDPNHLHGLFRDKVERINPGFGFDLITLEAGGVEDMQDRQNRL DGAADDDLHLTQLVDRLSARFGARAITRPVLRASHIPERAERHMAADAMLAEPETAPLKERPLRLFDHPEEVRVLYAVPE GPPAQFVWRRQTHRVMRYSGPERIAPEWWKDRPGTRLRDYFKVENHAGQRIWLYREGLHEDGRGGDPRWFVHGCFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 52831; Mature: 52700
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLVLVREGHHGPVVHAANRAARLGGINPGARLVDMRAICPELHVEYADIMGDRAALDRL CCEEEEECCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VLWARRWCPWTVRDGEDGLILDTTGSDHLLGGEAAMLTTMETQLSLLGISARLAVAPTWG HHHHHHCCCCEEECCCCCEEEECCCCCCEECCCHHEEEHHHHHHHHHEEEEEEEECCCCH AAWALARFGPVRSVCAADEVDIKLGALPVTGLRLENDTVVLLRRLGLKTIGALMDVPRLS HHHHHHHHCCHHHHHCCCCCCEEECCEEEECEEECCCHHHHHHHHCHHHHHHHHCCHHHH LARRFVKAALEANPLMRLDQALGKLAEPVASVGASPRLRVQSSLAEPIFDPTPYLPGLCE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCHHHH DLCEALKQAGQGCRRLGLTVYHTDGDVSHVSVATSATTRDPNHLHGLFRDKVERINPGFG HHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC FDLITLEAGGVEDMQDRQNRLDGAADDDLHLTQLVDRLSARFGARAITRPVLRASHIPER EEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH AERHMAADAMLAEPETAPLKERPLRLFDHPEEVRVLYAVPEGPPAQFVWRRQTHRVMRYS HHHHHHHHHHHCCCCCCCHHHCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC GPERIAPEWWKDRPGTRLRDYFKVENHAGQRIWLYREGLHEDGRGGDPRWFVHGCFA CCCCCCCHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure PLVLVREGHHGPVVHAANRAARLGGINPGARLVDMRAICPELHVEYADIMGDRAALDRL CEEEEECCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH VLWARRWCPWTVRDGEDGLILDTTGSDHLLGGEAAMLTTMETQLSLLGISARLAVAPTWG HHHHHHCCCCEEECCCCCEEEECCCCCCEECCCHHEEEHHHHHHHHHEEEEEEEECCCCH AAWALARFGPVRSVCAADEVDIKLGALPVTGLRLENDTVVLLRRLGLKTIGALMDVPRLS HHHHHHHHCCHHHHHCCCCCCEEECCEEEECEEECCCHHHHHHHHCHHHHHHHHCCHHHH LARRFVKAALEANPLMRLDQALGKLAEPVASVGASPRLRVQSSLAEPIFDPTPYLPGLCE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCCCCHHHH DLCEALKQAGQGCRRLGLTVYHTDGDVSHVSVATSATTRDPNHLHGLFRDKVERINPGFG HHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC FDLITLEAGGVEDMQDRQNRLDGAADDDLHLTQLVDRLSARFGARAITRPVLRASHIPER EEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHH AERHMAADAMLAEPETAPLKERPLRLFDHPEEVRVLYAVPEGPPAQFVWRRQTHRVMRYS HHHHHHHHHHHCCCCCCCHHHCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC GPERIAPEWWKDRPGTRLRDYFKVENHAGQRIWLYREGLHEDGRGGDPRWFVHGCFA CCCCCCCHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA