Click here to switch to the map view.

The map label for this gene is lrpC [H]

Identifier: 89054010

GI number: 89054010

Start: 1489633

End: 1490136

Strand: Reverse

Name: lrpC [H]

Synonym: Jann_1519

Alternate gene names: 89054010

Gene position: 1490136-1489633 (Counterclockwise)

Preceding gene: 89054012

Following gene: 89054009

Centisome position: 34.51

GC content: 53.57

Gene sequence:

>504_bases
ATGTCTATCGCGGAATTTAAGGCACAAAAGAAGGAAATACATCCTTCCAACCTTCGATCCGAAGGTAGTGGTTTAGATAG
CATTGATGCTGCGATTTTGCGTGAGCTTTGCGAAGATGCGCGGATTCCGCGTGCAGAGCTATCTCGGCGAGTGGGCTTGT
CAGCGCCAAGCGTTTCTGATCGTGTACGACGCTTAGAGGACGTCGGCATCATCGCAAGTTATGGCGCACGCATTGATCCA
GCCCGCCTTGGCTATGGGTTGACGGTCCTAATCCGCGCGCGGCCTTTGCCGGGTGAAATGAGCAAAATGATCGAAGCAAT
TCAGGACACACCGCAGATTGTCGCCTGTGATCGCGTCTCAGGTGAGGATTGCTTTGTTGCCCGCGCGCATGTTCGAGACG
TGGCTGAAATGGAGGCGGTAATTGATCGGATCGTGCCGTTTGGTGCGACCAACTCATCCATCGTCCAATCGACACCCGTC
GAAGAACGACTGGTTCAGCTTTGA

Upstream 100 bases:

>100_bases
ATAGCACCAGGGGCGCTGGCGGAGGCGGGGTTTGTGGGGGCTTGATTCGACATACCGTCACAATGCAAGGTGTTTTGCAG
GCATAATATGGAGGTCAGAT

Downstream 100 bases:

>100_bases
TATCAAAACAGTCATTTACCCTGATCCAGCGAAAGAGCGCTTAGTCCCGCAATGTGTACGTTGGACGAGGCCCGGGGTTC
GCGCTTGCGGTGAATGTCCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVSDRVRRLEDVGIIASYGARIDP
ARLGYGLTVLIRARPLPGEMSKMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSTPV
EERLVQL

Sequences:

>Translated_167_residues
MSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVSDRVRRLEDVGIIASYGARIDP
ARLGYGLTVLIRARPLPGEMSKMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSTPV
EERLVQL
>Mature_166_residues
SIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVSDRVRRLEDVGIIASYGARIDPA
RLGYGLTVLIRARPLPGEMSKMIEAIQDTPQIVACDRVSGEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSTPVE
ERLVQL

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=123, Percent_Identity=36.5853658536585, Blast_Score=73, Evalue=9e-15,
Organism=Escherichia coli, GI87081742, Length=141, Percent_Identity=28.3687943262411, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18251; Mature: 18120

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVSD
CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
RVRRLEDVGIIASYGARIDPARLGYGLTVLIRARPLPGEMSKMIEAIQDTPQIVACDRVS
HHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
GEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSTPVEERLVQL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCC
>Mature Secondary Structure 
SIAEFKAQKKEIHPSNLRSEGSGLDSIDAAILRELCEDARIPRAELSRRVGLSAPSVSD
CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
RVRRLEDVGIIASYGARIDPARLGYGLTVLIRARPLPGEMSKMIEAIQDTPQIVACDRVS
HHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCC
GEDCFVARAHVRDVAEMEAVIDRIVPFGATNSSIVQSTPVEERLVQL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]