| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053895
Identifier: 89053895
GI number: 89053895
Start: 1373398
End: 1374132
Strand: Reverse
Name: 89053895
Synonym: Jann_1404
Alternate gene names: NA
Gene position: 1374132-1373398 (Counterclockwise)
Preceding gene: 89053896
Following gene: 89053888
Centisome position: 31.82
GC content: 62.04
Gene sequence:
>735_bases ATGACACGGGGCGGCAAAACCGTCTTCGGGGCCAGCGTCGGCATCCTGATGCTGGAAACGCAATTCCCGCGCATCCCCGG CGATATCGGCAATGCGCTGACATGGCCGTTTCCGGTGCATTACAAGGTCGTGCCCGGCGCCACGCCAGATAACATCGTGC GCGGCGATCCATGGACCCGTGCACAGGATTTCATCAAGGCGGGCAAGGAGTTGGTGGCCATGGGCTGCGACGGGGTGGCG ACGAATTGCGGCTTCCTCGCGCTTCTGCAAGATGAGATGAAAGAGGCCTTGGGCGTGCCGGTCGCCACATCGTCCCTGAT CCAGGCTCCGATGATTTCGGCCATTCTGCCGCCGGGCAAACATATGACCATACTGACGATCTCCGCCGATACGTTAACCC GCGCGCATCTGGACGCCGCCGGGGTGCCGGAGGGGACACCCGTTGTAGGCACCGAAGGCGGCCGGGAGTTCACCCGCGCG GTTCTGGGCGATGAGATCGAGATCAACTTTGAAGCGGCCCGTGCAGACATGCTGGAGGCCGCCGAAGCGCTTGTGACATC CTACCCAGACACCGGAGCGATCTTGCTCGAATGCACCAACATGGTGCCCTATGCCGCTGATATCAGGCATAGAAGCGGGC TTCCGGTCTATTCCGTCTACAGCCTTCTGACATGGTTTCACGCGGGCTTGACGCCACGCCGCTTTCCGGTGGATCTGGAC GACCCCCGTCCTTAG
Upstream 100 bases:
>100_bases GCGCACTGGCCGCCTTGCGTGCCCATATCGAGCTGCGGAAAGAGGACGCCACACAGGCCGTCCGCACGGCATTCTCCGAA ATCTACGTGCAGGCGAGCTG
Downstream 100 bases:
>100_bases GCCCGGATAGCGTCGGCCAACTGATTGTGCCCCAGCGACGTCGCGCCGATCTGCGCCAGCGTGATACTTGTCTCGTCTTT CAACACAGACCACAGCTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTRGGKTVFGASVGILMLETQFPRIPGDIGNALTWPFPVHYKVVPGATPDNIVRGDPWTRAQDFIKAGKELVAMGCDGVA TNCGFLALLQDEMKEALGVPVATSSLIQAPMISAILPPGKHMTILTISADTLTRAHLDAAGVPEGTPVVGTEGGREFTRA VLGDEIEINFEAARADMLEAAEALVTSYPDTGAILLECTNMVPYAADIRHRSGLPVYSVYSLLTWFHAGLTPRRFPVDLD DPRP
Sequences:
>Translated_244_residues MTRGGKTVFGASVGILMLETQFPRIPGDIGNALTWPFPVHYKVVPGATPDNIVRGDPWTRAQDFIKAGKELVAMGCDGVA TNCGFLALLQDEMKEALGVPVATSSLIQAPMISAILPPGKHMTILTISADTLTRAHLDAAGVPEGTPVVGTEGGREFTRA VLGDEIEINFEAARADMLEAAEALVTSYPDTGAILLECTNMVPYAADIRHRSGLPVYSVYSLLTWFHAGLTPRRFPVDLD DPRP >Mature_243_residues TRGGKTVFGASVGILMLETQFPRIPGDIGNALTWPFPVHYKVVPGATPDNIVRGDPWTRAQDFIKAGKELVAMGCDGVAT NCGFLALLQDEMKEALGVPVATSSLIQAPMISAILPPGKHMTILTISADTLTRAHLDAAGVPEGTPVVGTEGGREFTRAV LGDEIEINFEAARADMLEAAEALVTSYPDTGAILLECTNMVPYAADIRHRSGLPVYSVYSLLTWFHAGLTPRRFPVDLDD PRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26099; Mature: 25968
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRGGKTVFGASVGILMLETQFPRIPGDIGNALTWPFPVHYKVVPGATPDNIVRGDPWTR CCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHH AQDFIKAGKELVAMGCDGVATNCGFLALLQDEMKEALGVPVATSSLIQAPMISAILPPGK HHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC HMTILTISADTLTRAHLDAAGVPEGTPVVGTEGGREFTRAVLGDEIEINFEAARADMLEA CEEEEEEECCHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHH AEALVTSYPDTGAILLECTNMVPYAADIRHRSGLPVYSVYSLLTWFHAGLTPRRFPVDLD HHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC DPRP CCCC >Mature Secondary Structure TRGGKTVFGASVGILMLETQFPRIPGDIGNALTWPFPVHYKVVPGATPDNIVRGDPWTR CCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHH AQDFIKAGKELVAMGCDGVATNCGFLALLQDEMKEALGVPVATSSLIQAPMISAILPPGK HHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC HMTILTISADTLTRAHLDAAGVPEGTPVVGTEGGREFTRAVLGDEIEINFEAARADMLEA CEEEEEEECCHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHH AEALVTSYPDTGAILLECTNMVPYAADIRHRSGLPVYSVYSLLTWFHAGLTPRRFPVDLD HHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC DPRP CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA