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The map label for this gene is xylR [H]

Identifier: 89053863

GI number: 89053863

Start: 1340578

End: 1341774

Strand: Reverse

Name: xylR [H]

Synonym: Jann_1372

Alternate gene names: 89053863

Gene position: 1341774-1340578 (Counterclockwise)

Preceding gene: 89053867

Following gene: 89053853

Centisome position: 31.07

GC content: 64.83

Gene sequence:

>1197_bases
ATGACGAACCCCACCGACAATACACCTAGTGCCCGCGATGCGGCCTCCGTGGGGCGCGGTACGAACCAGGGCGGTATGCG
GGAATCGAATGAACGCGTGGTCCTGACATTGCTCAGACGCCAGTCAGATATGGCGAAAGCCGACATTGCCCGGAGCACTG
GGCTATCGGCCCAGACGGTCGCCCGCCTGATCGGATCGCTGGAGGCCGATGGTCTGATCGTGCGCGGCACGCCGCAGAAA
GGGCGCATCGGACAGCCATCCGTGCCCTTGTCCCTCAACCCCGACGGCGCAGTGTTTTTGGGGATGAAGGTCGGTCGCCG
GTCGGTCGAAATGATCGCCACGGATTTCATGGGGCAGATCATTGGCCGCGAGAAGGAGATCTACGACTACCCCGACTTCG
ACGCCGTGTTGAGGTTTGCGACCCAGACTGCGGCCGCCCTCAAAGCACATCTGCCCGCCCCACTGCGCACACGTATTGCC
GGTATGGGCATCGCGATGCCCTTTTTCTTATGGAGTTGGGCCGAACAGATCGGCGTGGACCAATCCCAGATGGCCGATTG
GCAGCACCGCGACCTGCAGGCGGAGGTCGCGACAGCACTTGATCTGCCCGTCTTCTTGCAGAACGACGCCACGTCGGCGT
GCAGCGCAGAGCTTGTCTTCGGAACACATCCCCTGCCCCGCAATGCGCTGTGTTTTTACATCGCGTTCTTCGTCGGCGGC
GGACTGGTTCTGAACAACGCGCTCTTTACCGGAACCACCGGCAATGCAGCGGGCTTGGGGCCGCTCCACGTCCCCGATCA
GGCTGGCGTTCCGCGTCCGCTGATCGAGCTGGCGTCGCTGGCCACGCTGGAGGCCGCGATGGAGGCGCGCGGCCAGGCCC
GCCGCAAGATGTGGGACACCCCCGAGCGCTGGGACGTGCCGCAAGATCTGCTCAACACCTGGGTCGACAGCTGCGCGCCC
GCACTGGCCCATGCGATCCGGTCCGTGCAGACGATCCTGGACCTGGAGATGGTGCTGATCGACGGCTGGCTGCCCCGCGA
CTTGTGCCTGACCGTGACCCAGCGTGTGCAACGGGAATTGGCCGCATTCAGCATGACGGGCATGCACCGACCCGAGGTGC
GGCACGGCTCCCTTGGCGCGGATGCCCGGGTATTGGGTGCAGCCAGCCTGCCGCTCAGCCGCCGGTTCTTGGTGTAG

Upstream 100 bases:

>100_bases
ATCTGACCGACCGTGGAAAGAGAGTCAATAACTAACTTCCAGAGAGTTATTTATTATGCTACCCCTGCCCGAACCCTAAA
GCGTGAGTGCAAGCTGTCCG

Downstream 100 bases:

>100_bases
GCTTCGACGATGAGGCCAACGCCCGCGAGATCCGCTATGGCATCATTTCGATGAGGCAAGCCGCATACTCAAATCGCGAC
AATGTGGTTGTCCCATCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTNPTDNTPSARDAASVGRGTNQGGMRESNERVVLTLLRRQSDMAKADIARSTGLSAQTVARLIGSLEADGLIVRGTPQK
GRIGQPSVPLSLNPDGAVFLGMKVGRRSVEMIATDFMGQIIGREKEIYDYPDFDAVLRFATQTAAALKAHLPAPLRTRIA
GMGIAMPFFLWSWAEQIGVDQSQMADWQHRDLQAEVATALDLPVFLQNDATSACSAELVFGTHPLPRNALCFYIAFFVGG
GLVLNNALFTGTTGNAAGLGPLHVPDQAGVPRPLIELASLATLEAAMEARGQARRKMWDTPERWDVPQDLLNTWVDSCAP
ALAHAIRSVQTILDLEMVLIDGWLPRDLCLTVTQRVQRELAAFSMTGMHRPEVRHGSLGADARVLGAASLPLSRRFLV

Sequences:

>Translated_398_residues
MTNPTDNTPSARDAASVGRGTNQGGMRESNERVVLTLLRRQSDMAKADIARSTGLSAQTVARLIGSLEADGLIVRGTPQK
GRIGQPSVPLSLNPDGAVFLGMKVGRRSVEMIATDFMGQIIGREKEIYDYPDFDAVLRFATQTAAALKAHLPAPLRTRIA
GMGIAMPFFLWSWAEQIGVDQSQMADWQHRDLQAEVATALDLPVFLQNDATSACSAELVFGTHPLPRNALCFYIAFFVGG
GLVLNNALFTGTTGNAAGLGPLHVPDQAGVPRPLIELASLATLEAAMEARGQARRKMWDTPERWDVPQDLLNTWVDSCAP
ALAHAIRSVQTILDLEMVLIDGWLPRDLCLTVTQRVQRELAAFSMTGMHRPEVRHGSLGADARVLGAASLPLSRRFLV
>Mature_397_residues
TNPTDNTPSARDAASVGRGTNQGGMRESNERVVLTLLRRQSDMAKADIARSTGLSAQTVARLIGSLEADGLIVRGTPQKG
RIGQPSVPLSLNPDGAVFLGMKVGRRSVEMIATDFMGQIIGREKEIYDYPDFDAVLRFATQTAAALKAHLPAPLRTRIAG
MGIAMPFFLWSWAEQIGVDQSQMADWQHRDLQAEVATALDLPVFLQNDATSACSAELVFGTHPLPRNALCFYIAFFVGGG
LVLNNALFTGTTGNAAGLGPLHVPDQAGVPRPLIELASLATLEAAMEARGQARRKMWDTPERWDVPQDLLNTWVDSCAPA
LAHAIRSVQTILDLEMVLIDGWLPRDLCLTVTQRVQRELAAFSMTGMHRPEVRHGSLGADARVLGAASLPLSRRFLV

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43085; Mature: 42954

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPTDNTPSARDAASVGRGTNQGGMRESNERVVLTLLRRQSDMAKADIARSTGLSAQTV
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARLIGSLEADGLIVRGTPQKGRIGQPSVPLSLNPDGAVFLGMKVGRRSVEMIATDFMGQI
HHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCEEEEEHHCHHHHHHHHHHHHHHH
IGREKEIYDYPDFDAVLRFATQTAAALKAHLPAPLRTRIAGMGIAMPFFLWSWAEQIGVD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCCC
QSQMADWQHRDLQAEVATALDLPVFLQNDATSACSAELVFGTHPLPRNALCFYIAFFVGG
HHHHHCHHHHHHHHHHHHHHCCCEEECCCCCCHHCCEEEECCCCCCCHHHHHHHHHHHCC
GLVLNNALFTGTTGNAAGLGPLHVPDQAGVPRPLIELASLATLEAAMEARGQARRKMWDT
CCEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PERWDVPQDLLNTWVDSCAPALAHAIRSVQTILDLEMVLIDGWLPRDLCLTVTQRVQREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAFSMTGMHRPEVRHGSLGADARVLGAASLPLSRRFLV
HHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure 
TNPTDNTPSARDAASVGRGTNQGGMRESNERVVLTLLRRQSDMAKADIARSTGLSAQTV
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARLIGSLEADGLIVRGTPQKGRIGQPSVPLSLNPDGAVFLGMKVGRRSVEMIATDFMGQI
HHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCEEEEEHHCHHHHHHHHHHHHHHH
IGREKEIYDYPDFDAVLRFATQTAAALKAHLPAPLRTRIAGMGIAMPFFLWSWAEQIGVD
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCCC
QSQMADWQHRDLQAEVATALDLPVFLQNDATSACSAELVFGTHPLPRNALCFYIAFFVGG
HHHHHCHHHHHHHHHHHHHHCCCEEECCCCCCHHCCEEEECCCCCCCHHHHHHHHHHHCC
GLVLNNALFTGTTGNAAGLGPLHVPDQAGVPRPLIELASLATLEAAMEARGQARRKMWDT
CCEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PERWDVPQDLLNTWVDSCAPALAHAIRSVQTILDLEMVLIDGWLPRDLCLTVTQRVQREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AAFSMTGMHRPEVRHGSLGADARVLGAASLPLSRRFLV
HHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]