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The map label for this gene is yeaM [H]

Identifier: 89053785

GI number: 89053785

Start: 1254777

End: 1255535

Strand: Reverse

Name: yeaM [H]

Synonym: Jann_1294

Alternate gene names: 89053785

Gene position: 1255535-1254777 (Counterclockwise)

Preceding gene: 89053786

Following gene: 89053784

Centisome position: 29.08

GC content: 56.26

Gene sequence:

>759_bases
ATGACGACAGATCACCCATCGGCGTACTGCTTTTTTCAAGATCTTGCGCCGCGTCCCCCGTTGGACGCGGCGTTTGATCG
TGACTACCTGCTGTATGCTATCCGCGGCGCGTTGCGCGTTTCCGTCGCTGGGGAAAGTTGGCTGCTACCGCCATCCTTTG
CGGCATGGTTGCCCGCGAACACGCCAATTTCAGTTGATATCGACAAACCTGTCACGACCTGCTCGGTCCTGGCGCGACCG
GGGCTTTGCACAGGTTTGCCCGAAAAAGCATGCGTGTTTCAGATGTCCCCAATGGCCCGACAGATGATCCATTATTGCAA
AGACTGGGGGCCAGATGCCGCACACCCAGCGCAGGCAGAAGGGTTCTTCCTTGCGTTGCTGCATGTTTGCGCAGATCTGG
CGGTCAAATCCGTTGATGTGAAACGCCCAACAGCGACGGATCCGGTTTTGCGGAAGGCCATCGACATCACTGAGGCGCAT
CTTGCGCAGGCGATCACCGCAAACGAGATTGCGCGAAAGGTCAATCTATCTGAGCGCAGCATGCAGCGGCATTTTCAAAT
GGATGTTGGCATGACGTGGTCACAAACGCTGACCCAGCTGCGGATGATCCATGCGGTCGCACTTTTGGCCGAAGGTAAAT
TGTCGATAATCCAGATTGCGGGGTACACGGGGTTTCAATCGCTCAGCGCATTCAACCGCGCTTTTCGAACTTTTGCCGCA
ACCACGCCGACCAAGTTCCGCAAAGCGCTGCTAGACTGA

Upstream 100 bases:

>100_bases
CCGCGCGAGTGAGACATTCGCCACGCTGGGAGCTGGCCTGCGGCCGTTGATGACAAAACCACCCATGACCATCGTGGCTG
AGGTCGATACCGTCTAGAAT

Downstream 100 bases:

>100_bases
TACCGCAAGCAGCCATCGGCCTCTTCGATGCAAGGGTCCGCTTTGTCCGCACCCTGTGAGTTCGAGTAAGGTGTGGTCAA
TGGCTCGTTGGGCACATTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTTDHPSAYCFFQDLAPRPPLDAAFDRDYLLYAIRGALRVSVAGESWLLPPSFAAWLPANTPISVDIDKPVTTCSVLARP
GLCTGLPEKACVFQMSPMARQMIHYCKDWGPDAAHPAQAEGFFLALLHVCADLAVKSVDVKRPTATDPVLRKAIDITEAH
LAQAITANEIARKVNLSERSMQRHFQMDVGMTWSQTLTQLRMIHAVALLAEGKLSIIQIAGYTGFQSLSAFNRAFRTFAA
TTPTKFRKALLD

Sequences:

>Translated_252_residues
MTTDHPSAYCFFQDLAPRPPLDAAFDRDYLLYAIRGALRVSVAGESWLLPPSFAAWLPANTPISVDIDKPVTTCSVLARP
GLCTGLPEKACVFQMSPMARQMIHYCKDWGPDAAHPAQAEGFFLALLHVCADLAVKSVDVKRPTATDPVLRKAIDITEAH
LAQAITANEIARKVNLSERSMQRHFQMDVGMTWSQTLTQLRMIHAVALLAEGKLSIIQIAGYTGFQSLSAFNRAFRTFAA
TTPTKFRKALLD
>Mature_251_residues
TTDHPSAYCFFQDLAPRPPLDAAFDRDYLLYAIRGALRVSVAGESWLLPPSFAAWLPANTPISVDIDKPVTTCSVLARPG
LCTGLPEKACVFQMSPMARQMIHYCKDWGPDAAHPAQAEGFFLALLHVCADLAVKSVDVKRPTATDPVLRKAIDITEAHL
AQAITANEIARKVNLSERSMQRHFQMDVGMTWSQTLTQLRMIHAVALLAEGKLSIIQIAGYTGFQSLSAFNRAFRTFAAT
TPTKFRKALLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=22.5225225225225, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27748; Mature: 27617

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDHPSAYCFFQDLAPRPPLDAAFDRDYLLYAIRGALRVSVAGESWLLPPSFAAWLPAN
CCCCCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCEECCCCHHHHCCCC
TPISVDIDKPVTTCSVLARPGLCTGLPEKACVFQMSPMARQMIHYCKDWGPDAAHPAQAE
CCEEEECCCCHHHHHHHHCCCCCCCCCCHHHEEECCHHHHHHHHHHHHCCCCCCCCCCCC
GFFLALLHVCADLAVKSVDVKRPTATDPVLRKAIDITEAHLAQAITANEIARKVNLSERS
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
MQRHFQMDVGMTWSQTLTQLRMIHAVALLAEGKLSIIQIAGYTGFQSLSAFNRAFRTFAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
TTPTKFRKALLD
CCHHHHHHHHCC
>Mature Secondary Structure 
TTDHPSAYCFFQDLAPRPPLDAAFDRDYLLYAIRGALRVSVAGESWLLPPSFAAWLPAN
CCCCCCEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCEECCCCHHHHCCCC
TPISVDIDKPVTTCSVLARPGLCTGLPEKACVFQMSPMARQMIHYCKDWGPDAAHPAQAE
CCEEEECCCCHHHHHHHHCCCCCCCCCCHHHEEECCHHHHHHHHHHHHCCCCCCCCCCCC
GFFLALLHVCADLAVKSVDVKRPTATDPVLRKAIDITEAHLAQAITANEIARKVNLSERS
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
MQRHFQMDVGMTWSQTLTQLRMIHAVALLAEGKLSIIQIAGYTGFQSLSAFNRAFRTFAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
TTPTKFRKALLD
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]