Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89053770

Identifier: 89053770

GI number: 89053770

Start: 1239730

End: 1240626

Strand: Reverse

Name: 89053770

Synonym: Jann_1279

Alternate gene names: NA

Gene position: 1240626-1239730 (Counterclockwise)

Preceding gene: 89053771

Following gene: 89053769

Centisome position: 28.73

GC content: 65.44

Gene sequence:

>897_bases
ATGAGCAGCATGACCCTAATCCGCCCCACGTCCAGAATCCGCGCGTTTTCCCTCGCGCTTGTGCCCGTGATCGCCCTCGC
AGGCTGCATGGAAGAAGGCGAAGGCCTCTTCAGTTCCCGCGACGCGGACGCTGACGGCCCGGCGCCCATCGGGGCCACGC
GCCTGGTGGAACGCGATGTGGAAGCGCCCGAGGTTTTCGAAGTCACGACAGACGGCCTTTGGGATGGTCGCCCGTCCCTG
GGTGGTGTCTGGGTGGCACATCCCGACGTCACCGATCCTGAGCGTGTGATCATCCGCAACGATGAAAACGGGCGCTTCGT
GATTGGGGCGCTCTTCCGGCGCGAGCGCGATAATCCTGGCCCGGATCTCCAGATTTCCTCGGACGCCGCCGCCGCCATTG
GCGCGCTTGCGGGCGATCCCACGATGCTGAACGTCACAGCGCTGCGCCGGGAAGAGGTGGCCGACACCGCCGAGGCCGCC
CCTGACGCAACGGCTCCGGGCGCAGCCATTGCCGCATCGGCCATCGCGGGTGAGATCACGTCTTCCCCGCTGGACGGTGC
CGACACCACCATCGAAGCCGCCGCAGCAGCAATCGACGCCGCCGAACCCGCACCGCAACCCACGGCACAGCCCACGACTG
CCCGCGCCACGCCAGACGGCGCGCCAGAGCGGGCATTTATTCAGATCGGCATCTTCTCTGTGCAAGAAAACGCCACCAAT
ACCGGGCAGGCCTTGCGCAGTGCGGGCCTTGAGCCCACAATCTATGATCAGTCAACCAACGGTCGCCAGTTCTGGCGCGT
TGTGGTGGGCCCCGCCGATAGCGAGGGCTCGCGCGATGCGATCCTGGCAAGTGTCCGTGATCTTGGCTTTGATGATGCCT
TTTTCGTAAGACGCTAG

Upstream 100 bases:

>100_bases
CAGATCGCTGTTTGCGTGGCCTCAACCTCGCAAATCCGGCAACGTCCGGGAGACTTAAACAACCCCCCGCGCGCCTGACG
CGTGGGGACAGAGCGCAGAG

Downstream 100 bases:

>100_bases
GACGCCATGCAAATCGCTACTCTGACAAAACCCGTCGCAACCCTCCTTGCGGCGGGTTGTTTCTTCGTCTCAAGCCTGAT
GGCCAACGCCCAAGGCTATG

Product: putative lipoprotein

Products: NA

Alternate protein names: Sporulation ; Lipoprotein; Sporulation Domain-Containing Protein; Sporulation And Repeat Protein

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSL
GGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAA
PDATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN
TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR

Sequences:

>Translated_298_residues
MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSL
GGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAA
PDATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN
TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR
>Mature_297_residues
SSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDVEAPEVFEVTTDGLWDGRPSLG
GVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPGPDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAP
DATAPGAAIAASAIAGEITSSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATNT
GQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31105; Mature: 30974

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDV
CCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
EAPEVFEVTTDGLWDGRPSLGGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPG
CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCC
PDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAPDATAPGAAIAASAIAGEIT
CCEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
SSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH
TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR
HHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
SSMTLIRPTSRIRAFSLALVPVIALAGCMEEGEGLFSSRDADADGPAPIGATRLVERDV
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCC
EAPEVFEVTTDGLWDGRPSLGGVWVAHPDVTDPERVIIRNDENGRFVIGALFRRERDNPG
CCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCC
PDLQISSDAAAAIGALAGDPTMLNVTALRREEVADTAEAAPDATAPGAAIAASAIAGEIT
CCEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
SSPLDGADTTIEAAAAAIDAAEPAPQPTAQPTTARATPDGAPERAFIQIGIFSVQENATN
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH
TGQALRSAGLEPTIYDQSTNGRQFWRVVVGPADSEGSRDAILASVRDLGFDDAFFVRR
HHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA