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The map label for this gene is ydhC [H]

Identifier: 89053735

GI number: 89053735

Start: 1198910

End: 1199545

Strand: Direct

Name: ydhC [H]

Synonym: Jann_1244

Alternate gene names: 89053735

Gene position: 1198910-1199545 (Clockwise)

Preceding gene: 89053732

Following gene: 89053738

Centisome position: 27.77

GC content: 67.61

Gene sequence:

>636_bases
ATGACCGATGCGGGGCAGAGAGACGCCTATGCGATGATCCTGGAGGCGATTGACGGCGGCATCTATCGTCCCGGCTCGCG
GCTGGTGGAAAGTGAGCTGGCCGACCGGTTTGGGGTCAGCCGCACGCCGATCCGTGAGGCCTTGCAGCGGCTGGAGACCC
AATCGCTGCTGACGCGGGACGGGCGGTCGCTGATCGTGGCGTCCCTGGATCATGCGCAGATGGCGGAGCTTTACGCCGTG
CGCCAGGAGCTGGAGGGGTTGGCCGCGCGGCTGGCCGCCCAACATGCCGCCCGGGAAGAGGTTGCGGTGCTGCACGATAT
GGTGGCGCAGGATCGGGCGCTTCTGGGCGATCCGGAGGCGCTGGCCCGGGCCAACCGGCGCTTTCATCACCAGATCCACC
TCGCCTCTCACAATCGGTATCTGGTCCAGCAACTGGACCTTGTCTACCGCTCCATGGCGCTGATGGCGCGGACCTCGCTG
GCGGCGGCGGGGCGCGGTGAGGATGCGATGGAAGAACATGCGGCGATTGTTGATGCCATTGCCGCGCGCGATGGGGACCG
CGCGGCCGACGCGCTCAAGGCGCATCTGTCAACGGCGTTCAAGGTCCGCCTGCGGGAAGAAGCGCAGCGGGGCTAG

Upstream 100 bases:

>100_bases
GACCGAGTGCGTGCAAGCCCGTGGCGGGCGCGCGCAAGTCACTGGACAGGTTCCGCGGCGGTGCGTAGCGTCCAAGGCCT
TGAGAAGGAGCGGATTTGCA

Downstream 100 bases:

>100_bases
CACCGGGCGGCGTTACTCCTCGGCGTCGCGGATGTCGTCTGCGCCGTGCTGGGTCGCGCCAAACTTTCCATGGGTGGTTT
TTGCCCAGAAAAACGGCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTDAGQRDAYAMILEAIDGGIYRPGSRLVESELADRFGVSRTPIREALQRLETQSLLTRDGRSLIVASLDHAQMAELYAV
RQELEGLAARLAAQHAAREEVAVLHDMVAQDRALLGDPEALARANRRFHHQIHLASHNRYLVQQLDLVYRSMALMARTSL
AAAGRGEDAMEEHAAIVDAIAARDGDRAADALKAHLSTAFKVRLREEAQRG

Sequences:

>Translated_211_residues
MTDAGQRDAYAMILEAIDGGIYRPGSRLVESELADRFGVSRTPIREALQRLETQSLLTRDGRSLIVASLDHAQMAELYAV
RQELEGLAARLAAQHAAREEVAVLHDMVAQDRALLGDPEALARANRRFHHQIHLASHNRYLVQQLDLVYRSMALMARTSL
AAAGRGEDAMEEHAAIVDAIAARDGDRAADALKAHLSTAFKVRLREEAQRG
>Mature_210_residues
TDAGQRDAYAMILEAIDGGIYRPGSRLVESELADRFGVSRTPIREALQRLETQSLLTRDGRSLIVASLDHAQMAELYAVR
QELEGLAARLAAQHAAREEVAVLHDMVAQDRALLGDPEALARANRRFHHQIHLASHNRYLVQQLDLVYRSMALMARTSLA
AAGRGEDAMEEHAAIVDAIAARDGDRAADALKAHLSTAFKVRLREEAQRG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=214, Percent_Identity=28.9719626168224, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081914, Length=175, Percent_Identity=27.4285714285714, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23254; Mature: 23122

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAGQRDAYAMILEAIDGGIYRPGSRLVESELADRFGVSRTPIREALQRLETQSLLTRD
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GRSLIVASLDHAQMAELYAVRQELEGLAARLAAQHAAREEVAVLHDMVAQDRALLGDPEA
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LARANRRFHHQIHLASHNRYLVQQLDLVYRSMALMARTSLAAAGRGEDAMEEHAAIVDAI
HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AARDGDRAADALKAHLSTAFKVRLREEAQRG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDAGQRDAYAMILEAIDGGIYRPGSRLVESELADRFGVSRTPIREALQRLETQSLLTRD
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GRSLIVASLDHAQMAELYAVRQELEGLAARLAAQHAAREEVAVLHDMVAQDRALLGDPEA
CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LARANRRFHHQIHLASHNRYLVQQLDLVYRSMALMARTSLAAAGRGEDAMEEHAAIVDAI
HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AARDGDRAADALKAHLSTAFKVRLREEAQRG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]