| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053652
Identifier: 89053652
GI number: 89053652
Start: 1125076
End: 1126035
Strand: Reverse
Name: 89053652
Synonym: Jann_1161
Alternate gene names: NA
Gene position: 1126035-1125076 (Counterclockwise)
Preceding gene: 89053653
Following gene: 89053651
Centisome position: 26.08
GC content: 59.27
Gene sequence:
>960_bases ATGAAAGTACTGAAAATCAAGACCGCCGTTGCGGCGCTCGCCTTGGCCACTTTTGCCGCGCCTGTCGCAATGGCTGAAGA TTATCCTGACCGTACCATTGAGGTGATCCATGCCTATGGGCCCGGCGGCGGCACCGACCGTTTCGTACGCGCTGTGGCGG TCCCGTTCGAGGAAATTGCTGGCGTCTCAATGGTGCCGATCGCTATTCAAGGTGGCGGCGGGATGCCGGCGTATGCCAAT TTCCTGCAGCGCCGTGTCGACGGCTATACCATGAAGGCCATCAGTCCGGACCAGATCATCGCGCATGTGTTGGGCCGTCA GGACATGGGTGAATTTACGCCGCTTGCCCGCGTACAATACGATCAGGGCATGATCATCGTGCCAGCCGACAGCCCGTTCC AGACGATTCAGGAATTCATCGAACATGCGCGCGAAAACCCCGGTGATCTGACCGTGGGCATCACCGGCGCTGCAGGCTTT GATGATACCGCAATGGGCCTGTGGAACATCGAAACAGGCACAGAAGTGACGACCGTTCCGTTCGGATCTTCCGAGATGGT ATCAAACACGCTTGGCGGTCAGGTTGACGCTATGCACGAAGAATACGGCCCCGCCCGTGGTTTGATTGACTCCGGTGACA TGCGCCCGCTGGTCGTGTTTTCGGATGAACGCCTGCCGGTGTTGCCCGATGTCCCGACCGCACAGGAACTCGGCTATGAT GTGACGCTGGGTCGCTGGCGCGCCTTTGCGATGCCTGCCGACGCGGATCCCGCACAGGTCGAGCGGATGTTCGAGCTTGT CAGCCAGGCCGTCGCTTCTGACGCCTACCAAGAGGTGCAAGAGCAGGCCGCGTTGCAATACCGCTCCGTGCTGCTTGGCC CAGATGAGTTTCAGGAATTCATTGACGCCGAAATCGCGACTTATACAGAGGTGCTGACAGCCCTCGGCCTCGTAGAGTGA
Upstream 100 bases:
>100_bases AATAGACAATTGGTCGGATAAACTGATCGGGGCGCCCCACGATCACGGGCGGAGGCGCTTGAACGAAAAAAACACGTGAC ATTTTTTGGGAGGAAAGAAA
Downstream 100 bases:
>100_bases TACCTCCCAGCCGCGCGGGGCTTCGGCCTTGCGCGGCACCTGCCTTCCCCTGCAATCCTCTGGTTTAGGAATGGACTCAT GGCCCATCGCCTACTGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF7 [H]
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MKVLKIKTAVAALALATFAAPVAMAEDYPDRTIEVIHAYGPGGGTDRFVRAVAVPFEEIAGVSMVPIAIQGGGGMPAYAN FLQRRVDGYTMKAISPDQIIAHVLGRQDMGEFTPLARVQYDQGMIIVPADSPFQTIQEFIEHARENPGDLTVGITGAAGF DDTAMGLWNIETGTEVTTVPFGSSEMVSNTLGGQVDAMHEEYGPARGLIDSGDMRPLVVFSDERLPVLPDVPTAQELGYD VTLGRWRAFAMPADADPAQVERMFELVSQAVASDAYQEVQEQAALQYRSVLLGPDEFQEFIDAEIATYTEVLTALGLVE
Sequences:
>Translated_319_residues MKVLKIKTAVAALALATFAAPVAMAEDYPDRTIEVIHAYGPGGGTDRFVRAVAVPFEEIAGVSMVPIAIQGGGGMPAYAN FLQRRVDGYTMKAISPDQIIAHVLGRQDMGEFTPLARVQYDQGMIIVPADSPFQTIQEFIEHARENPGDLTVGITGAAGF DDTAMGLWNIETGTEVTTVPFGSSEMVSNTLGGQVDAMHEEYGPARGLIDSGDMRPLVVFSDERLPVLPDVPTAQELGYD VTLGRWRAFAMPADADPAQVERMFELVSQAVASDAYQEVQEQAALQYRSVLLGPDEFQEFIDAEIATYTEVLTALGLVE >Mature_319_residues MKVLKIKTAVAALALATFAAPVAMAEDYPDRTIEVIHAYGPGGGTDRFVRAVAVPFEEIAGVSMVPIAIQGGGGMPAYAN FLQRRVDGYTMKAISPDQIIAHVLGRQDMGEFTPLARVQYDQGMIIVPADSPFQTIQEFIEHARENPGDLTVGITGAAGF DDTAMGLWNIETGTEVTTVPFGSSEMVSNTLGGQVDAMHEEYGPARGLIDSGDMRPLVVFSDERLPVLPDVPTAQELGYD VTLGRWRAFAMPADADPAQVERMFELVSQAVASDAYQEVQEQAALQYRSVLLGPDEFQEFIDAEIATYTEVLTALGLVE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 - InterPro: IPR006311 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34378; Mature: 34378
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLKIKTAVAALALATFAAPVAMAEDYPDRTIEVIHAYGPGGGTDRFVRAVAVPFEEIA CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCHHHHC GVSMVPIAIQGGGGMPAYANFLQRRVDGYTMKAISPDQIIAHVLGRQDMGEFTPLARVQY CCEEEEEEEECCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCHHEEEE DQGMIIVPADSPFQTIQEFIEHARENPGDLTVGITGAAGFDDTAMGLWNIETGTEVTTVP CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEC FGSSEMVSNTLGGQVDAMHEEYGPARGLIDSGDMRPLVVFSDERLPVLPDVPTAQELGYD CCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCC VTLGRWRAFAMPADADPAQVERMFELVSQAVASDAYQEVQEQAALQYRSVLLGPDEFQEF EEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH IDAEIATYTEVLTALGLVE HHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKVLKIKTAVAALALATFAAPVAMAEDYPDRTIEVIHAYGPGGGTDRFVRAVAVPFEEIA CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCHHHHC GVSMVPIAIQGGGGMPAYANFLQRRVDGYTMKAISPDQIIAHVLGRQDMGEFTPLARVQY CCEEEEEEEECCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCHHEEEE DQGMIIVPADSPFQTIQEFIEHARENPGDLTVGITGAAGFDDTAMGLWNIETGTEVTTVP CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEC FGSSEMVSNTLGGQVDAMHEEYGPARGLIDSGDMRPLVVFSDERLPVLPDVPTAQELGYD CCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCC VTLGRWRAFAMPADADPAQVERMFELVSQAVASDAYQEVQEQAALQYRSVLLGPDEFQEF EEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH IDAEIATYTEVLTALGLVE HHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7851418 [H]