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The map label for this gene is yddE [C]

Identifier: 89053629

GI number: 89053629

Start: 1099043

End: 1099909

Strand: Reverse

Name: yddE [C]

Synonym: Jann_1138

Alternate gene names: 89053629

Gene position: 1099909-1099043 (Counterclockwise)

Preceding gene: 89053631

Following gene: 89053628

Centisome position: 25.47

GC content: 67.24

Gene sequence:

>867_bases
ATGCTCAATTTCCATGTCTATGACGTCTTCACCGACACACCCTTCACCGGGAACCCCCTCGCGATTGTCGAAGGGGCCGA
TGGGCTGACGACCGCGCAGATGCAAACCATCGCGCGCCAGTTCAACCTGTCCGAGACGATCTTTGTCCAGACCCCGGATG
ACCCGGCCCACACCGCCAAGGTACGCATCTTCTTTCCCACCGCCGAGATCCCGTTTGCGGGCCACCCCACCATCGGATGC
GCCCTGCATCTGGCGGACGGCGCGACACAGGTCACGCTGGAGGAGGTCGCGGGCCTCGTCCCCGTCACCATCGCCAATGG
TCTGGCGGAATTCACCGCCCCCAAACTCCCGCGCGCCCTGCCCGCCACGCCCGACCGCGCCACCCTGGCTGCGGCCCTCG
GGCTGGCCGACAGCGCGCTGGCCGACACGCCATTGGGAAATTTTGAGGGCGGTCCCAGCTTTCTCTACGTCGAACTCACC
TCGCTCGACGCGCTGGCCCAGGTCAGGATCTGTGAACCCGCCTTCACAGAGACCCGCAAGACCGCAGGCGATACCGGCGC
GATCTACGCCTATGTGCACACAGGTCCCAACCAGATTCAGGGCCGCATGTTCGACCCGCCCGCCGGTATTGCCGAGGATC
CGGCCACCGGCTCCGCCACGGCGATCCTGGCCGCGCATCTCAATGCCGCCGGCCACCTGCCTCATACCGGCACCACAGCC
TTCCACCTCAAACAGGGGGTGGAGATGGGTCGCCCCTCCGCCCTGCGCCTGACCATCGACACCGAAGCTGGGGCCCTCAC
CGCCATCCGCGTTGCGGGCCAGGCCGTTCACATCGCCCGGGGCGAGATCCGCGTGCCCGCCCCCTGA

Upstream 100 bases:

>100_bases
ATCGCGCCGTTCATCAGCAATTGTCATGGCCAGCGCCCTTGCCCTCGGGGCGGGGTGCCTGCACCCTCATGCGCAATCCA
CGCGCAACGGGGCCAGTCTC

Downstream 100 bases:

>100_bases
CCCGCGCCACCGGTAAGGCTTCCCTTACTGACCTGCCGCCGACCCCGCCGCTACGCTTCCTCCTATTCTTATAGGAGATT
TCCCATGGGCCTGTCCGTCA

Product: phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MLNFHVYDVFTDTPFTGNPLAIVEGADGLTTAQMQTIARQFNLSETIFVQTPDDPAHTAKVRIFFPTAEIPFAGHPTIGC
ALHLADGATQVTLEEVAGLVPVTIANGLAEFTAPKLPRALPATPDRATLAAALGLADSALADTPLGNFEGGPSFLYVELT
SLDALAQVRICEPAFTETRKTAGDTGAIYAYVHTGPNQIQGRMFDPPAGIAEDPATGSATAILAAHLNAAGHLPHTGTTA
FHLKQGVEMGRPSALRLTIDTEAGALTAIRVAGQAVHIARGEIRVPAP

Sequences:

>Translated_288_residues
MLNFHVYDVFTDTPFTGNPLAIVEGADGLTTAQMQTIARQFNLSETIFVQTPDDPAHTAKVRIFFPTAEIPFAGHPTIGC
ALHLADGATQVTLEEVAGLVPVTIANGLAEFTAPKLPRALPATPDRATLAAALGLADSALADTPLGNFEGGPSFLYVELT
SLDALAQVRICEPAFTETRKTAGDTGAIYAYVHTGPNQIQGRMFDPPAGIAEDPATGSATAILAAHLNAAGHLPHTGTTA
FHLKQGVEMGRPSALRLTIDTEAGALTAIRVAGQAVHIARGEIRVPAP
>Mature_288_residues
MLNFHVYDVFTDTPFTGNPLAIVEGADGLTTAQMQTIARQFNLSETIFVQTPDDPAHTAKVRIFFPTAEIPFAGHPTIGC
ALHLADGATQVTLEEVAGLVPVTIANGLAEFTAPKLPRALPATPDRATLAAALGLADSALADTPLGNFEGGPSFLYVELT
SLDALAQVRICEPAFTETRKTAGDTGAIYAYVHTGPNQIQGRMFDPPAGIAEDPATGSATAILAAHLNAAGHLPHTGTTA
FHLKQGVEMGRPSALRLTIDTEAGALTAIRVAGQAVHIARGEIRVPAP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=300, Percent_Identity=31, Blast_Score=105, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6321818, Length=301, Percent_Identity=30.5647840531561, Blast_Score=118, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30001; Mature: 30001

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFHVYDVFTDTPFTGNPLAIVEGADGLTTAQMQTIARQFNLSETIFVQTPDDPAHTAK
CCEEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
VRIFFPTAEIPFAGHPTIGCALHLADGATQVTLEEVAGLVPVTIANGLAEFTAPKLPRAL
EEEEEECCCCCCCCCCCCEEEEEECCCCCEEEHHHHCCEEEEHHHHHHHHHCCCCCCCCC
PATPDRATLAAALGLADSALADTPLGNFEGGPSFLYVELTSLDALAQVRICEPAFTETRK
CCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHH
TAGDTGAIYAYVHTGPNQIQGRMFDPPAGIAEDPATGSATAILAAHLNAAGHLPHTGTTA
CCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCH
FHLKQGVEMGRPSALRLTIDTEAGALTAIRVAGQAVHIARGEIRVPAP
HEEHHCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEECCEEECCCC
>Mature Secondary Structure
MLNFHVYDVFTDTPFTGNPLAIVEGADGLTTAQMQTIARQFNLSETIFVQTPDDPAHTAK
CCEEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
VRIFFPTAEIPFAGHPTIGCALHLADGATQVTLEEVAGLVPVTIANGLAEFTAPKLPRAL
EEEEEECCCCCCCCCCCCEEEEEECCCCCEEEHHHHCCEEEEHHHHHHHHHCCCCCCCCC
PATPDRATLAAALGLADSALADTPLGNFEGGPSFLYVELTSLDALAQVRICEPAFTETRK
CCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHH
TAGDTGAIYAYVHTGPNQIQGRMFDPPAGIAEDPATGSATAILAAHLNAAGHLPHTGTTA
CCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCH
FHLKQGVEMGRPSALRLTIDTEAGALTAIRVAGQAVHIARGEIRVPAP
HEEHHCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEECCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]