| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ydcZ [C]
Identifier: 89053628
GI number: 89053628
Start: 1098509
End: 1098958
Strand: Reverse
Name: ydcZ [C]
Synonym: Jann_1137
Alternate gene names: 89053628
Gene position: 1098958-1098509 (Counterclockwise)
Preceding gene: 89053629
Following gene: 89053627
Centisome position: 25.45
GC content: 68.67
Gene sequence:
>450_bases ATGGGCCTGTCCGTCACCCTCGTCATCGCCCTCGTGGTTGCAGTGGGCGCAGCGCTCGCCATGCAAGCCCCGATCAACGC CGCGCTGGCCCGTGAAGTGGGCGACCCCACGGCGGCGGCGGCCATATCCTTTGCCATCGGCTTCGTCGTACTGGCGGCCA TCGCCTGGTATCGCGGATCGTCGATGACAGCCCTCACCTCGCTCAGCGGCGTGCCGTGGTGGGCGCTGATGGGCGGCGTC CTGGGGGCGCTGTGGATCTGGGCTGCGATCTGGTCCCTGCCCCGCTTGGGCGTGGTGACGATGTTCGGCGCAATGATCCT GGGCCAGCTGATCGCTGCCATGGTGCTGGATGCGCGCGGCTCCTTCGGGATGGAGGCGCGCCCCATCGACCTCACCCGCC TCATGGCCGTCGCCATGGTTGCAGGCGGCGTGATCCTCTCCAAAGCCTGA
Upstream 100 bases:
>100_bases CGTGCCCGCCCCCTGACCCGCGCCACCGGTAAGGCTTCCCTTACTGACCTGCCGCCGACCCCGCCGCTACGCTTCCTCCT ATTCTTATAGGAGATTTCCC
Downstream 100 bases:
>100_bases CCGCGTCCAAAGGTCCCGAATGCCCGCCCGCGCGCTTCCCCTGTTTCATCTGGGCCAATACAACTCATGCACACCGCCCG AACCCGGACCAAACATCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MGLSVTLVIALVVAVGAALAMQAPINAALAREVGDPTAAAAISFAIGFVVLAAIAWYRGSSMTALTSLSGVPWWALMGGV LGALWIWAAIWSLPRLGVVTMFGAMILGQLIAAMVLDARGSFGMEARPIDLTRLMAVAMVAGGVILSKA
Sequences:
>Translated_149_residues MGLSVTLVIALVVAVGAALAMQAPINAALAREVGDPTAAAAISFAIGFVVLAAIAWYRGSSMTALTSLSGVPWWALMGGV LGALWIWAAIWSLPRLGVVTMFGAMILGQLIAAMVLDARGSFGMEARPIDLTRLMAVAMVAGGVILSKA >Mature_148_residues GLSVTLVIALVVAVGAALAMQAPINAALAREVGDPTAAAAISFAIGFVVLAAIAWYRGSSMTALTSLSGVPWWALMGGVL GALWIWAAIWSLPRLGVVTMFGAMILGQLIAAMVLDARGSFGMEARPIDLTRLMAVAMVAGGVILSKA
Specific function: Unknown
COG id: COG3238
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15212; Mature: 15080
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.7 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLSVTLVIALVVAVGAALAMQAPINAALAREVGDPTAAAAISFAIGFVVLAAIAWYRGS CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC SMTALTSLSGVPWWALMGGVLGALWIWAAIWSLPRLGVVTMFGAMILGQLIAAMVLDARG CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC SFGMEARPIDLTRLMAVAMVAGGVILSKA CCCCCCCCHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure GLSVTLVIALVVAVGAALAMQAPINAALAREVGDPTAAAAISFAIGFVVLAAIAWYRGS CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC SMTALTSLSGVPWWALMGGVLGALWIWAAIWSLPRLGVVTMFGAMILGQLIAAMVLDARG CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC SFGMEARPIDLTRLMAVAMVAGGVILSKA CCCCCCCCHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA