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The map label for this gene is 89053607

Identifier: 89053607

GI number: 89053607

Start: 1075095

End: 1076396

Strand: Reverse

Name: 89053607

Synonym: Jann_1116

Alternate gene names: NA

Gene position: 1076396-1075095 (Counterclockwise)

Preceding gene: 89053611

Following gene: 89053606

Centisome position: 24.93

GC content: 61.75

Gene sequence:

>1302_bases
ATGCGACAGCTACTCACCTATGACCTAATGGAATCTATGCGGGTCACAAATCAATGGATGGGCGCATCGGCCCGCGCATT
GTGCAGCTATCCGCAACTGGGCCTGGCCGCAAATCCCTTCATCCAGCTAACCGCCGCCTGGGGCGAAGTGGCCGAGCGGT
CGTTCGCGCGCATGGCCGCCAAGCCAGATTGGGGCATCAGCTCCATTCCCGGCGCGGATGGGCGCGACCACGTGATCAGC
ATTGAACCGGTGATGGAGCGTGCGTTCGGCGACCTCATCCGCTTTGACGTGCAGGGACGGGAGCCGACTGGCCGCAAGAT
CCTGCTGGTCGCCCCGATGTCGGGCCATTACGCCACGCTTCTGCGCAAGACGGTGCTGTCGCTGCTGCCCGACGCGGACG
TCTACATCACCGACTGGCACAATGCGCGCGATATTCCGGTGAGTGCGGGCAAGTTCGATATCGAGGATTACACCCACTAC
CTGGTTGATTTCATGCGCGAGATGGGGCCGGACACAAACGTGATCGCCGTGTGCCAGCCCGCGCCCCTAGCGCTTGCCGC
GACCGCCTATCTGGCGGAGGAAGACCCCAAGGCACAGCCCCGCACGCTGACCCTGATCGGTGGCCCGATTGACCCCGACG
CCGCCGCCACGGATGTGACCGACTTTGGCCGCCGCGTGACGATGGGGCATCTGGAAAAGTTCGTCGTCCAGCGCGTCGGC
TTCAAATATGCGGGCGCGGGGCGGATGGTCTATCCGGGCATCCAGCAGCTGGCCAGTTTCATGGCGATGAACGCCGAAAC
CCACGCCAAGGCGTTTTCTGATCAGGTTGTCGCCGTCTCCAAGGGCGAGGCCAGCGACCACGACAAGCACAACGTCTTCT
ACGATGAATATCTGGCGGTCATGGATATGACGGCGGAATTCTACCTCAGCACCGTGGAGCGGATCTTCAAAAACCGCGAG
ATTGCGAAAAACACCTTCGTGGTCGACGGCAAGCCGGTGGATATCGGCAAGATCACATCGGTCGCGGTGAAGACGGTGGA
GGGCGGGAAGGATGACATCTCGGCCCCCGGTCAATGTGTGGCCGCTTTGGATATGCTGACCGGTCTGCCGGAGGAGAAGA
AGGCCAATTACATTGAGCCCGACGCCGGCCATTACGGCATCTTCGCGGGCAAGTCCTGGCGCAACAACATCCGGCCCCTG
GTGCTGGAATTCATTGACGCCAATTCGGGCATCAAAACGCCCGCCAAACGCGCCAAGCCGAAGCTGGTCGAAGATCCGCC
CGTCGAAAACGTCGCGGTCTGA

Upstream 100 bases:

>100_bases
CGATATACATTACGGGGACCTGGGTGAGGCGGTCCACGCGACGAAATGATCCGGTGTGTCCCAGCGTTGTGTGGGGCCGG
AGCAGACGCTTGGAGTACTT

Downstream 100 bases:

>100_bases
TCCGATGACCGAGGTGCCCTGGTCCTGTCGCTGCGGCGCGGTTCACGGCACCGTCTCGGTGGAGCGTCGGTCCGGAACAC
CCGTCGTGTGCCACTGCGAC

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRQLLTYDLMESMRVTNQWMGASARALCSYPQLGLAANPFIQLTAAWGEVAERSFARMAAKPDWGISSIPGADGRDHVIS
IEPVMERAFGDLIRFDVQGREPTGRKILLVAPMSGHYATLLRKTVLSLLPDADVYITDWHNARDIPVSAGKFDIEDYTHY
LVDFMREMGPDTNVIAVCQPAPLALAATAYLAEEDPKAQPRTLTLIGGPIDPDAAATDVTDFGRRVTMGHLEKFVVQRVG
FKYAGAGRMVYPGIQQLASFMAMNAETHAKAFSDQVVAVSKGEASDHDKHNVFYDEYLAVMDMTAEFYLSTVERIFKNRE
IAKNTFVVDGKPVDIGKITSVAVKTVEGGKDDISAPGQCVAALDMLTGLPEEKKANYIEPDAGHYGIFAGKSWRNNIRPL
VLEFIDANSGIKTPAKRAKPKLVEDPPVENVAV

Sequences:

>Translated_433_residues
MRQLLTYDLMESMRVTNQWMGASARALCSYPQLGLAANPFIQLTAAWGEVAERSFARMAAKPDWGISSIPGADGRDHVIS
IEPVMERAFGDLIRFDVQGREPTGRKILLVAPMSGHYATLLRKTVLSLLPDADVYITDWHNARDIPVSAGKFDIEDYTHY
LVDFMREMGPDTNVIAVCQPAPLALAATAYLAEEDPKAQPRTLTLIGGPIDPDAAATDVTDFGRRVTMGHLEKFVVQRVG
FKYAGAGRMVYPGIQQLASFMAMNAETHAKAFSDQVVAVSKGEASDHDKHNVFYDEYLAVMDMTAEFYLSTVERIFKNRE
IAKNTFVVDGKPVDIGKITSVAVKTVEGGKDDISAPGQCVAALDMLTGLPEEKKANYIEPDAGHYGIFAGKSWRNNIRPL
VLEFIDANSGIKTPAKRAKPKLVEDPPVENVAV
>Mature_433_residues
MRQLLTYDLMESMRVTNQWMGASARALCSYPQLGLAANPFIQLTAAWGEVAERSFARMAAKPDWGISSIPGADGRDHVIS
IEPVMERAFGDLIRFDVQGREPTGRKILLVAPMSGHYATLLRKTVLSLLPDADVYITDWHNARDIPVSAGKFDIEDYTHY
LVDFMREMGPDTNVIAVCQPAPLALAATAYLAEEDPKAQPRTLTLIGGPIDPDAAATDVTDFGRRVTMGHLEKFVVQRVG
FKYAGAGRMVYPGIQQLASFMAMNAETHAKAFSDQVVAVSKGEASDHDKHNVFYDEYLAVMDMTAEFYLSTVERIFKNRE
IAKNTFVVDGKPVDIGKITSVAVKTVEGGKDDISAPGQCVAALDMLTGLPEEKKANYIEPDAGHYGIFAGKSWRNNIRPL
VLEFIDANSGIKTPAKRAKPKLVEDPPVENVAV

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47484; Mature: 47484

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQLLTYDLMESMRVTNQWMGASARALCSYPQLGLAANPFIQLTAAWGEVAERSFARMAA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHC
KPDWGISSIPGADGRDHVISIEPVMERAFGDLIRFDVQGREPTGRKILLVAPMSGHYATL
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCCHHHHH
LRKTVLSLLPDADVYITDWHNARDIPVSAGKFDIEDYTHYLVDFMREMGPDTNVIAVCQP
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
APLALAATAYLAEEDPKAQPRTLTLIGGPIDPDAAATDVTDFGRRVTMGHLEKFVVQRVG
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
FKYAGAGRMVYPGIQQLASFMAMNAETHAKAFSDQVVAVSKGEASDHDKHNVFYDEYLAV
CEECCCCCEECCCHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH
MDMTAEFYLSTVERIFKNREIAKNTFVVDGKPVDIGKITSVAVKTVEGGKDDISAPGQCV
HHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCHHHHHHEEEECCCCCCCCCCHHHH
AALDMLTGLPEEKKANYIEPDAGHYGIFAGKSWRNNIRPLVLEFIDANSGIKTPAKRAKP
HHHHHHHCCCCHHCCCCCCCCCCCEEEEECCCHHCCCCCEEHHEECCCCCCCCCHHHCCC
KLVEDPPVENVAV
CCCCCCCCCCCCC
>Mature Secondary Structure
MRQLLTYDLMESMRVTNQWMGASARALCSYPQLGLAANPFIQLTAAWGEVAERSFARMAA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHC
KPDWGISSIPGADGRDHVISIEPVMERAFGDLIRFDVQGREPTGRKILLVAPMSGHYATL
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCCHHHHH
LRKTVLSLLPDADVYITDWHNARDIPVSAGKFDIEDYTHYLVDFMREMGPDTNVIAVCQP
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
APLALAATAYLAEEDPKAQPRTLTLIGGPIDPDAAATDVTDFGRRVTMGHLEKFVVQRVG
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
FKYAGAGRMVYPGIQQLASFMAMNAETHAKAFSDQVVAVSKGEASDHDKHNVFYDEYLAV
CEECCCCCEECCCHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH
MDMTAEFYLSTVERIFKNREIAKNTFVVDGKPVDIGKITSVAVKTVEGGKDDISAPGQCV
HHHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCCCCHHHHHHEEEECCCCCCCCCCHHHH
AALDMLTGLPEEKKANYIEPDAGHYGIFAGKSWRNNIRPLVLEFIDANSGIKTPAKRAKP
HHHHHHHCCCCHHCCCCCCCCCCCEEEEECCCHHCCCCCEEHHEECCCCCCCCCHHHCCC
KLVEDPPVENVAV
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA