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The map label for this gene is cspE [C]

Identifier: 89053585

GI number: 89053585

Start: 1056235

End: 1056441

Strand: Reverse

Name: cspE [C]

Synonym: Jann_1094

Alternate gene names: 89053585

Gene position: 1056441-1056235 (Counterclockwise)

Preceding gene: 89053588

Following gene: 89053584

Centisome position: 24.47

GC content: 61.35

Gene sequence:

>207_bases
ATGCCAAGCGGCACTGTTAAATGGTTCAACACCACCAAAGGATTTGGGTTCATCGCCCCGGATGACGGCGGCAAAGACGT
CTTCGTCCACATCTCCGCCGTCGAGCGCGCAGGTTGGAGCGATCTGCCCGACGACACGAAACTCACCTACGAGCTGCGCG
AGGGCCGGGACGGCCGCGAAAGCGCGGTGGAGTTGGTGAAGGTCTGA

Upstream 100 bases:

>100_bases
AGGATGGCCTGCGCACCCCATGAAGAGCGCCGGGCCGGTCCTGGATGGCCAGACCTCTGGCCGTGTCACGAAACGCTCTT
GGAAGGAAAGACACGGGATT

Downstream 100 bases:

>100_bases
CAAACGGCTCCGTTGACTGAAAATGCCCCTGCGCCACCCCGAACCCAGGCGCGGGTGATATATTTTTTGTGTCGTTCTCT
TTAAGCCAAGCCGTGCTGCT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MPSGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYELREGRDGRESAVELVKV

Sequences:

>Translated_68_residues
MPSGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYELREGRDGRESAVELVKV
>Mature_67_residues
PSGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYELREGRDGRESAVELVKV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=59, Percent_Identity=49.1525423728814, Blast_Score=69, Evalue=8e-14,
Organism=Escherichia coli, GI1789979, Length=56, Percent_Identity=51.7857142857143, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1788126, Length=55, Percent_Identity=50.9090909090909, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI2367114, Length=60, Percent_Identity=46.6666666666667, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=45.3125, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=41.2698412698413, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=43.9393939393939, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7500; Mature: 7369

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYELREGRDGRE
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCH
SAVELVKV
HHEEEECC
>Mature Secondary Structure 
PSGTVKWFNTTKGFGFIAPDDGGKDVFVHISAVERAGWSDLPDDTKLTYELREGRDGRE
CCCCEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCH
SAVELVKV
HHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]