Click here to switch to the map view.

The map label for this gene is 89053483

Identifier: 89053483

GI number: 89053483

Start: 949860

End: 950840

Strand: Reverse

Name: 89053483

Synonym: Jann_0992

Alternate gene names: NA

Gene position: 950840-949860 (Counterclockwise)

Preceding gene: 89053484

Following gene: 89053482

Centisome position: 22.02

GC content: 57.7

Gene sequence:

>981_bases
ATGGAATTTCTCACCGACCTTTTCGACAGTGCCAACGCGTTCCTGATCGACCAATTGGGAGAGCTTGGTCCCCTCATCGC
CGTTGGTGGCCTTGGGGTTCTGCTGTGCCTCGTGGCCCTGCCGACGCTGATGAAGAAGCAGAAAGACCCGTACAAAAAAC
TACGGGACGAACGTGGTGGCACGGGCAAAGCGAAGGGCAAGAAAGATGGCCTGCGGCTGAGTAGCAAGAATGAGAAGTTG
GAACGCTTCGCGCAATACCTGGAACCCCAGGATGAGCAGGAGCTGTCGGCCACTCAGCTGCAGATGATCCGCGCAGGCTA
CCGTGCGAAGTCCTCGATCCAGATGTTCAACTTCGCCAAACTTGCCCTCGCGCTCGGGGGGTTGCTGCTCGGCACGCTTT
ACGTGTTGATCACCGGCGGTGGCGGCTCGGCGCAGAACTCCATCCTGTTCGTGATCGTCCCCGGTGTCGTGGGCTATTAT
GCGCCCAAATACTGGATCACGAAGCGGGCGCAGACACGCGAAGACCAGATCAATTCCGGCTTTCCAGACGCGCTCGACCT
GATGCTCGTCTGCGTGGAGGCGGGCCAGTCTTTGGACCAGGCCATCATCAAGGTCGCCAATGAGATCAAGACCTCCTATC
CCCCTCTGGCCGAGGAGTTCGAGATCGTCTCCTATGAAATGAAGGCCGGTAAGGACAAGACCAAAGTCCTGCGCGACATG
GGCGAACGCGTTGGCATTCAGGACGTGAACTCCTTCATCACGACTCTGATCCAGTCCTCCACCTTCGGCACCTCGGTGGC
TGAGGCGCTGAAAGTCTACTCCGATGAAATGCGCGACAAACGCATTAGCCGGGCCGAGGAAAAGGCCAATAAGCTGCCGA
CAAAGCTGACGCTGTTCACCATGCTGTTTTGTGTGCCACCGCTTCTGGTGATCCTGATCGGACCATCAATCTATGGCATC
GCGACCGATCTTGCGCGTTGA

Upstream 100 bases:

>100_bases
TTGGGTCATCATGCGCGTCCTCGTAAATATCAAAGTCTGAACAAGCCCCATAAGGGACGGCCCCCTCGGGGGTACGTCGC
ATTCGTGAAAGAGCAGCCCG

Downstream 100 bases:

>100_bases
GCCCGCATTCTGCTTCGAAAATGCATCCGTGGATCCTTGATCCCACGAAAAAAGGTTTAGCCAACAGGCGTCGCCATCCG
TATGGTGACGCCTGAGCAGT

Product: type II secretion system protein

Products: NA

Alternate protein names: Flp Pilus Assembly Protein TadC; Type II Secretion System F Domain Protein; Type II/IV Secretion System Protein TadC Subfamily; Type II Secretion System F Domain-Containing Protein; TadC Protein; Flp Pilus Assembly Protein; Pilus Assembly Protein; Tad Secretion System Secretion Accessory Protein; Type II Secretion System Protein F; Type II Secretion System F Domain; Bacterial Type II Secretion System Protein F Domain; Tight Adherence TadC-Like Transmembrane Protein; Pilus Component Protein; TadC Pilus Assembly Protein; Integral Membrane Protein; TadC Family Type II/IV Secretion System Protein; Type II Secretion System; TadC Component Of Type IV Pilus; Type II Secretion System Protein F Domain; Type II Secretion System Protein F Domain Protein; Tight Adherence TadC Related Transmembrane Protein; Tight Adherence TadC-Related Transmembrane Protein; Secretion System Protein TadC; Tyrosine Phenol-Lyase; Fimbriae-Related Membrane Protein; Pilus Assembly Protein TadC; Putative Tight Adherence TadC-Like Transmembrane Protein; TadC Subunit; Components Of Type IV Pilus TadC; Pilus Assemble Protein; Transmembrane Type II Secretion Protein; Von Willebrand Factor Type A; Component Of Type IV Pilus; Type II Secretion System Integral Membrane Subunit; Component Of Pilus Protein; Components Of Type IV Pilus

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MEFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPTLMKKQKDPYKKLRDERGGTGKAKGKKDGLRLSSKNEKL
ERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFNFAKLALALGGLLLGTLYVLITGGGGSAQNSILFVIVPGVVGYY
APKYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTKVLRDM
GERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTKLTLFTMLFCVPPLLVILIGPSIYGI
ATDLAR

Sequences:

>Translated_326_residues
MEFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPTLMKKQKDPYKKLRDERGGTGKAKGKKDGLRLSSKNEKL
ERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFNFAKLALALGGLLLGTLYVLITGGGGSAQNSILFVIVPGVVGYY
APKYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTKVLRDM
GERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTKLTLFTMLFCVPPLLVILIGPSIYGI
ATDLAR
>Mature_326_residues
MEFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPTLMKKQKDPYKKLRDERGGTGKAKGKKDGLRLSSKNEKL
ERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFNFAKLALALGGLLLGTLYVLITGGGGSAQNSILFVIVPGVVGYY
APKYWITKRAQTREDQINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTKVLRDM
GERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTKLTLFTMLFCVPPLLVILIGPSIYGI
ATDLAR

Specific function: Unknown

COG id: COG2064

COG function: function code NU; Flp pilus assembly protein TadC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35788; Mature: 35788

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPTLMKKQKDPYKKLRDERGG
CCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
TGKAKGKKDGLRLSSKNEKLERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFNFAK
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALALGGLLLGTLYVLITGGGGSAQNSILFVIVPGVVGYYAPKYWITKRAQTREDQINSG
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCC
FPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTKVLRDM
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
GERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTKLTLFT
HHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MLFCVPPLLVILIGPSIYGIATDLAR
HHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MEFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVALPTLMKKQKDPYKKLRDERGG
CCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
TGKAKGKKDGLRLSSKNEKLERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFNFAK
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALALGGLLLGTLYVLITGGGGSAQNSILFVIVPGVVGYYAPKYWITKRAQTREDQINSG
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCC
FPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTKVLRDM
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
GERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTKLTLFT
HHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MLFCVPPLLVILIGPSIYGIATDLAR
HHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA