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The map label for this gene is yhjC [H]

Identifier: 89053378

GI number: 89053378

Start: 842206

End: 843126

Strand: Reverse

Name: yhjC [H]

Synonym: Jann_0887

Alternate gene names: 89053378

Gene position: 843126-842206 (Counterclockwise)

Preceding gene: 89053383

Following gene: 89053370

Centisome position: 19.53

GC content: 57.98

Gene sequence:

>921_bases
ATGATTGACCTGCGCCTCATCGAGACGTTCATTCAAGCCGCGCGCCGGGAGAGCTTTTCCAGCGCAGCAAAGGCGCTGCA
TGTCAGTCCCGGTGCCGTAAGCCAGAACATCAAGTCTCTTGAGGAGCAGCTTCAGACACGTCTGTTCACGCGCACAACAC
GCCAGATCAAGCTGACACCAGAGGGTCAACGGTTCCTGCAACGCTGTGCGCCAGCGGTCGAGGCGCTGCAAACGGCAGCC
AGCGCGATCCAAGACGAACGCGAGGCGTTTCAGGGTCGCCTGCGCATCACATCCACAACGGCCTTTGGCCGCGCGGAGAT
CCTGCCACTCATCGCGAGCTTTCAAGAGACACACCCGGAGCTCGAAATCGAGCTGTCGCTGTCTGACGGCTTTGTCGATT
TGGTGGCCGAAGAATACGATCTTGCGATCCGGGGCGGTATCCTCCCGGACAGCGACTACATCGCGCGATTGCTGATACCG
GTGACACCACTGGTCTGCGCCGCTCCCGGCTACCTTAAGAAATTCGGCATACCAAAGAATGAAGCCGATCTGGCGAGCCA
CCGGTTGATTGGAATGCGCTCCAATCCATCACAGCGCGTCTTTGCTTGGGAATTTTCTGATCCTGACTCTCCCCAGCCCA
GGCGGGTGGAAGTCACACCGACCAGCGTCATGAACGATCCGGAAAGCACAGTACGGGCAGCGAGCCTCGGCATGGGACTG
GCACAGGTCGGCAGCAATGTGGTTTTGCCACTCGTCGCGTCCGGAGAGTTGCGGATCGTATTTCCAGAAGCCGCTGTGCA
AAGTCGCGGCCTCTACGCCGTTTATCCGTCAAAAAGGTTCGCGCCAAAGAAGCTGACCGCCTTTTTGGATCATTTGGTCG
ACGGCTTCAGTCAAAGGGCCGATCTGATTTATACACATTAG

Upstream 100 bases:

>100_bases
CACTCTCTTGTCGTCGATGACATGAAGATGCGCGCCTCCATCAGCTTTTAGAATATGCCTCGCATTGACATCACTTGTTA
GTTCGACTGATTAATGAGAT

Downstream 100 bases:

>100_bases
CGGCGAAGCGGTCATTCGACGTGATGCAGCGTATCGGGAGGTCCGGGCCAGTTCTGTTGAAAAACTCTTTCTTGATCGGT
GGTAATGCCGCTGATTCAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTPEGQRFLQRCAPAVEALQTAA
SAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPELEIELSLSDGFVDLVAEEYDLAIRGGILPDSDYIARLLIP
VTPLVCAAPGYLKKFGIPKNEADLASHRLIGMRSNPSQRVFAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGMGL
AQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLVDGFSQRADLIYTH

Sequences:

>Translated_306_residues
MIDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTPEGQRFLQRCAPAVEALQTAA
SAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPELEIELSLSDGFVDLVAEEYDLAIRGGILPDSDYIARLLIP
VTPLVCAAPGYLKKFGIPKNEADLASHRLIGMRSNPSQRVFAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGMGL
AQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLVDGFSQRADLIYTH
>Mature_306_residues
MIDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTPEGQRFLQRCAPAVEALQTAA
SAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPELEIELSLSDGFVDLVAEEYDLAIRGGILPDSDYIARLLIP
VTPLVCAAPGYLKKFGIPKNEADLASHRLIGMRSNPSQRVFAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGMGL
AQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLVDGFSQRADLIYTH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=31.8936877076412, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1789639, Length=304, Percent_Identity=30.5921052631579, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=30.2721088435374, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=31.3380281690141, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=31.438127090301, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=27.8169014084507, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788706, Length=288, Percent_Identity=25, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=27.1477663230241, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=121, Percent_Identity=39.6694214876033, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790208, Length=147, Percent_Identity=31.2925170068027, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=32.6388888888889, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI145693105, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=26.7123287671233, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=178, Percent_Identity=30.8988764044944, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=174, Percent_Identity=28.735632183908, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787949, Length=303, Percent_Identity=24.4224422442244, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33688; Mature: 33688

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTP
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC
EGQRFLQRCAPAVEALQTAASAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
LEIELSLSDGFVDLVAEEYDLAIRGGILPDSDYIARLLIPVTPLVCAAPGYLKKFGIPKN
EEEEEEECCCHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
EADLASHRLIGMRSNPSQRVFAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGMGL
HHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHCCCH
AQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLVDGFSQRA
HHHCCCEEEEEEECCCEEEEECHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
DLIYTH
CEEECC
>Mature Secondary Structure
MIDLRLIETFIQAARRESFSSAAKALHVSPGAVSQNIKSLEEQLQTRLFTRTTRQIKLTP
CCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC
EGQRFLQRCAPAVEALQTAASAIQDEREAFQGRLRITSTTAFGRAEILPLIASFQETHPE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
LEIELSLSDGFVDLVAEEYDLAIRGGILPDSDYIARLLIPVTPLVCAAPGYLKKFGIPKN
EEEEEEECCCHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
EADLASHRLIGMRSNPSQRVFAWEFSDPDSPQPRRVEVTPTSVMNDPESTVRAASLGMGL
HHHHHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHCCCH
AQVGSNVVLPLVASGELRIVFPEAAVQSRGLYAVYPSKRFAPKKLTAFLDHLVDGFSQRA
HHHCCCEEEEEEECCCEEEEECHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
DLIYTH
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]